Neomark Oral Cancer Ontology, version 4

Last uploaded: November 11, 2011
Preferred Name

anatomical entity
Synonyms
Definitions

An anatomical entity is a material entity that is part of a multicellular organism, and which is large enough so that it forms an identifiable structure in the organism. Specifically, it excludes granular parts of the organism, such as atoms, molecules, cells, which can be removed from the organism without affecting it. It is defined as the union of 'multi-tissue structure', 'body substance' and 'portion of tissue'

ID

http://purl.obolibrary.org/obo/OBI_0100015

CN_pl

OBI_0100015s

CN_sg

OBI_0100015

definition

An anatomical entity is a material entity that is part of a multicellular organism, and which is large enough so that it forms an identifiable structure in the organism. Specifically, it excludes granular parts of the organism, such as atoms, molecules, cells, which can be removed from the organism without affecting it. It is defined as the union of 'multi-tissue structure', 'body substance' and 'portion of tissue'

definition editor

Tina Boussard

Philippe Rocca-Serra

Bjoern Peters

definition source

MO

editor note

not super happy about liquids (blood, sperm), as they seem to be 'granular' somewhat, and not form a structure.

10/20/09: This class and all subclasses are currently problematic. They should all be imported from other OBO foundry ontologies. (FMA / CARO / UBERON). Currently two problems exist: There is no cross species anatomy that covers all the entities we need. Secondly: there is not good boundary between anatomical entities and smaller parts in FMA. Currently we will use anatomical entities as if they are valid across species.

editor preferred term

anatomical entity

example of usage

Tissue, organ, system, sperm, blood or body location (arm).

has curation status

http://purl.obolibrary.org/obo/IAO_0000121

imported from

http://purl.obolibrary.org/obo/obi.owl

label

anatomical entity

prefLabel

anatomical entity

subClassOf

http://www.ifomis.org/bfo/1.1/snap#MaterialEntity

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/OBI_0100015 PDRO SAME_URI
http://purl.obolibrary.org/obo/OBI_0100015 OBI SAME_URI
http://purl.obolibrary.org/obo/OBI_0100015 ONE SAME_URI
http://purl.obolibrary.org/obo/OBI_0100015 EGO SAME_URI
http://purl.obolibrary.org/obo/OBI_0100015 BERO SAME_URI
http://purl.obolibrary.org/obo/OBI_0100015 OBI_IEE SAME_URI
http://purl.obolibrary.org/obo/OBI_0100015 AERO SAME_URI
http://purl.org/obo/owl/FMA#FMA_62955 SDO LOOM
http://ecoinformatics.org/oboe/oboe.1.0/oboe-anatomy.owl#AnatomicalEntity OBOE-SBC LOOM
http://purl.obolibrary.org/obo/CiinteA_0000791 CIINTEADO LOOM
http://purl.obolibrary.org/obo/TrOn_0000001 TRON LOOM
http://www.semanticweb.org/ontologies/2010/5/22/Ontology1277229984000.owl#HPI:0000075 HPIO LOOM
http://sig.uw.edu/fma#Anatomical_entity BDO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 CARO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 IDO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 UBERON LOOM
http://purl.obolibrary.org/obo/CARO_0000000 CLO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 PLANA LOOM
http://purl.obolibrary.org/obo/CARO_0000000 INBANCIDO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 PLANP LOOM
http://purl.obolibrary.org/obo/CARO_0000000 AEO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 OHPI LOOM
http://purl.obolibrary.org/obo/CARO_0000000 FOVT LOOM
http://purl.obolibrary.org/obo/CARO_0000000 BSPO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 AGRO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 CTENO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 GO-PLUS LOOM
http://purl.obolibrary.org/obo/CARO_0000000 DPO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 BERO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 VSAO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 SCO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 SEPIO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 HHEAR LOOM
http://purl.obolibrary.org/obo/CARO_0000000 ICDO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 NIFSTD LOOM
http://purl.obolibrary.org/obo/CARO_0000000 ECAO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 KTAO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 PHIPO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 VIDO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 GENEPIO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 ECTO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 EHDAA2 LOOM
http://purl.obolibrary.org/obo/CARO_0000000 IDO-COVID-19 LOOM
http://purl.obolibrary.org/obo/CARO_0000000 TAO LOOM
http://purl.obolibrary.org/obo/CARO_0000000 FBbi LOOM
http://purl.obolibrary.org/obo/CARO_0000000 FNS-H LOOM
http://purl.obolibrary.org/obo/CARO_0000000 AISM LOOM
http://purl.obolibrary.org/obo/MooccuA_0000791 MOOCCUADO LOOM
http://sig.biostr.washington.edu/fma3.0#AnatomicalEntity MCBCC LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_6 NIFSTD LOOM
http://purl.obolibrary.org/obo/PhmammA_0000791 PHMAMMADO LOOM
http://purl.org/obo/owlapi/fma#FMA_62955 BIOMODELS LOOM
http://purl.obolibrary.org/obo/TGMA_0001822 TGMA LOOM
http://purl.obolibrary.org/obo/MooculA_0000791 MOOCULADO LOOM
http://purl.obolibrary.org/obo/TADS_0000583 TADS LOOM
http://scai.fraunhofer.de/NDDUO#Anatomical PE-O LOOM
http://www.semanticweb.org/admin/ontologies/2022/7/MIO:00001 MIO LOOM
http://www.case.edu/EpilepsyOntology.owl#AnatomicalEntity EPSO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 NPOKB LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 CL LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 SATO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 ENM LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 MFMO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OAE LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 NEIO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 PORO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 PDRO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 UBERON LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 EUPATH LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 CLO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 PLANA LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 PO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 INBANCIDO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OVAE LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 PLANP LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OHPI LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 GCBO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 VSO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 CCONT LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 COLAO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 FOVT LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OCMR LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 HOIP LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 GALLONT LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OPMI LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 DTO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 RBO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OBI_BCGO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 AGRO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 LIFO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 XPO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 ORCS LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 BMONT LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 ENVO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 HSO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 COVID-19 LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 PCL LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 PATO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 BAO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 NIFDYS LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 EPIO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 CTENO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 GO-PLUS LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 SCO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 CEPH LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 NBO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 HHEAR LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 TXPO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 APOLLO-SV LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 ODAE LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 HRA LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 PLANTSO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 ICDO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 CHRO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 CIDO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 UPHENO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OCVDAE LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 ECAO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 KTAO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 PHIPO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 GENEPIO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 GENO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 ECTO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OHMI LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OBOREL LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 SLSO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 EXMO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 CHR LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 MAXO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 ERO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 VO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 ODNAE LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 AISM LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 NMDCO LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 OBA LOOM
http://purl.obolibrary.org/obo/TRAK_0001337 TRAK LOOM
http://purl.obolibrary.org/obo/CLAO_0001117 CLAO LOOM
http://purl.obolibrary.org/obo/LEPAO_0000006 LEPAO LOOM
http://purl.obolibrary.org/obo/FMA_62955 OHD LOOM
http://purl.obolibrary.org/obo/FMA_62955 MELO LOOM
http://purl.obolibrary.org/obo/FMA_62955 NIO LOOM
http://purl.obolibrary.org/obo/OARCS_0000226 OARCS LOOM
http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_1111111 NEMO LOOM
http://semanticscience.org/resource/SIO_001262 HASCO LOOM
http://semanticscience.org/resource/SIO_001262 HHEARP LOOM
http://semanticscience.org/resource/SIO_001262 SIO LOOM
http://semanticscience.org/resource/SIO_001262 CHEAR LOOM
http://semanticscience.org/resource/SIO_001262 BIOMO LOOM
http://semanticscience.org/resource/SIO_001262 SCO LOOM
http://semanticscience.org/resource/SIO_001262 HHEAR LOOM
http://semanticscience.org/resource/SIO_001262 POEM LOOM
http://purl.obolibrary.org/obo/HaroreA_0000791 HAROREADO LOOM
http://purl.obolibrary.org/obo/PhfumiA_0000791 PHFUMIADO LOOM
http://purl.obolibrary.org/obo/CisaviA_0000791 CISAVIADO LOOM
http://purl.obolibrary.org/obo/MoocciA_0000791 MOOCCIADO LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_1002 BIRNLEX LOOM
http://www.semanticweb.org/EpilepsySemiologyOntology#anatomical_entity ESO_C LOOM
http://radlex.org/RID/RID3 RADLEX LOOM
http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_000000130 ECG LOOM
http://purl.obolibrary.org/obo/FBbt_10000000 DPO LOOM
http://purl.obolibrary.org/obo/FBbt_10000000 FB-BT LOOM
http://www.bioassayontology.org/bao#BAO_0002930 BAO LOOM
http://www.owl-ontologies.com/Ontology1239104585.owl#AnatomicalEntity BCGO LOOM
http://purl.org/sig/ont/fma/fma62955 NPOKB LOOM
http://purl.org/sig/ont/fma/fma62955 FMA LOOM
http://purl.org/sig/ont/fma/fma62955 GSSO LOOM
http://purl.org/sig/ont/fma/fma62955 HRA LOOM
https://w3id.org/biolink/vocab/AnatomicalEntity BIOLINK LOOM
http://purl.org/sig/fma/Anatomical_entity ONSTR LOOM
http://purl.obolibrary.org/obo/OBI_0100015 AERO LOOM
http://purl.obolibrary.org/obo/HAO_0000000 HAO LOOM
http://purl.obolibrary.org/obo/HaauraA_0000791 HAAURAADO LOOM
http://purl.obolibrary.org/obo/SPD_0000000 SPD LOOM