loading...| Preferred Name |
anatomical space |
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| Synonyms |
common coordinate space atlas space anatomical coordinate space physical space parameterized coordinate space |
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| Definitions |
An anatomical space is a combination of a mathematical space with an anatomical space such that there is a defined mapping between the anatomical axes and the mathematical axes. A mathematical coordinate space by itself is NOT an anatomical space because it admits all possible orientations and reflections of the anatomical space, so for example a brain can be rotated in all directions and still be in that mathematical coordinate space. Such spaces are called unoriented spaces and are a source of significant pain when dealing with anatomical datasets. |
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| ID |
http://uri.interlex.org/tgbugs/uris/readable/atlas/Space |
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| BFO_0000051 |
http://uri.interlex.org/tgbugs/uris/readable/atlas/AxisOrigin http://uri.interlex.org/tgbugs/uris/readable/atlas/AnatomicalAxisAlignmentVector http://uri.interlex.org/tgbugs/uris/readable/atlas/AxisDirectionMatrix |
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| hasIlxId | ||
| IAO_0000115 |
An anatomical space is a combination of a mathematical space with an anatomical space such that there is a defined mapping between the anatomical axes and the mathematical axes. A mathematical coordinate space by itself is NOT an anatomical space because it admits all possible orientations and reflections of the anatomical space, so for example a brain can be rotated in all directions and still be in that mathematical coordinate space. Such spaces are called unoriented spaces and are a source of significant pain when dealing with anatomical datasets. |
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| IAO_0000116 |
To avoid problems like those encountered by nifti an anatomical reference space MUST define an anatomical axis alignment vector which states, for example, [X, Y, Z] -> [R, A, D] (left hand rule). This immediately indicates the three annotations required on any unoriented dataset as opposed to someone trying to apply the anatomical directions directly to the unoriented dataset |
|
| label |
anatomical space |
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| localName |
space |
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| prefixIRI |
atom:Space |
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| prefLabel |
anatomical space |
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| synonym |
common coordinate space atlas space anatomical coordinate space physical space parameterized coordinate space |
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| subClassOf |
http://uri.interlex.org/tgbugs/uris/readable/atlas/Artifact http://uri.interlex.org/tgbugs/uris/readable/parcellationArtifact |