Annotator

Get annotations for biomedical text with terms from the ontologies

Select Ontologies

Select UMLS Semantic Types

Include Mappings: Automatic Manual

Include Ancestors Up To Level:

The National Center for Biomedical Ontology is one of the National Centers for Biomedical Computing supported by the NHGRI, the NHLBI, and the NIH Common Fund under grant U54-HG004028.
Copyright © 2005‑2013, The Board of Trustees of Leland Stanford Junior University. All rights reserved.
NCBO Website Release Notes Terms of Use Privacy Policy How to Cite

	Biodiversity Information Standards (BIS)
	Cancer Biomedical Informatics Grid (caBIG)
	Clinical and Translational Science Awards (CTSA)
	Consultative Group on International Agricultural Research (CGIAR)
	CTSA Health Ontology Mapper (CTSA-HOM)
	OBO Foundry (OBO Foundry)
	Proteomics Standards Initiative (PSI)
	Unified Medical Language System (UMLS)
	WHO Family of International Classifications (WHO-FIC)

	All Organisms
	Anatomy
	Animal Development
	Animal Gross Anatomy
	Arabadopsis
	Biological Process
	Biomedical Resources
	Cell
	Cellular anatomy
	Chemical
	Development
	Dysfunction
	Ethology
	Experimental Conditions
	Fish Anatomy
	Gene Product
	Genomic and Proteomic
	Gross Anatomy
	Health
	Human
	Human Developmental Anatomy
	Imaging
	Immunology
	Microbial Anatomy
	Molecule
	Mouse Anatomy
	Neurologic Disease
	Neurological Disorder
	Other
	Phenotype
	Physicochemical
	Plant
	Plant Anatomy
	Plant Development
	Protein
	Subcellular
	Subcellular anatomy
	Taxonomic Classification
	Upper Level Ontology
	Vocabularies
	Yeast

Annotator

Select Ontologies

Select Multiple Ontologies close

Annotations
Results are filtered by:

	Select all filtered ontologies (show all)
	ABA Adult Mouse Brain (ABA)
	Adverse Event Reporting ontology (AERO)
	African Traditional Medicine (ATMO)
	AI/RHEUM (AIR)
	Amino Acid (amino-acid)
	Amphibian gross anatomy (AAO)
	Amphibian taxonomy (ATO)
	Anatomic Pathology Lexicon (PathLex) (PathLex)
	Anatomical Entity Ontology (AEO)
	Animal natural history and life history (ADW)
	apollo-akesios (apollo)
	Ascomycete phenotype ontology (APO)
	ATOL (ATOL)
	Basic Formal Ontology (BFO)
	Bilateria anatomy (BILA)
	Bio-health ontological knowledge base- cystic fibrosis (OntoKBCF)
	BioAssay Ontology (BAO)
	Bioinformatics operations, types of data, formats, and topics (EDAM)
	Bioinformatics Web Service Ontology (OBIws)
	Biological Collections Ontology (bco)
	Biological imaging methods (FBbi)
	Biomedical Resource Ontology (BRO)
	BioPAX (BP)
	BioPortal Metadata (BPMetadata)
	BioTop (BT)
	BIRNLex (birnlex)
	Bleeding History Phenotype (BHO)
	Body System (bodysystem)
	Bone Dysplasia Ontology (BDO)
	BOOK (BO)
	Breast Cancer Grading Ontology (BCGO)
	Breast tissue cell lines (MCBCC)
	BRENDA tissue / enzyme source (BTO)
	Brucellosis Ontology (IDOBRU)
	C. elegans development (WBls)
	C. elegans gross anatomy (WBbt)
	C. elegans phenotype (WBPhenotype)
	Cancer Chemoprevention Ontology (CanCO)
	Cancer Research and Management ACGT Master Ontology (ACGT)
	Cardiac Electrophysiology Ontology (EP)
	CareLex (CareLex)
	Cell Behavior Ontology (CBO)
	Cell Culture Ontology (CCONT)
	Cell Cycle Ontology (CCO)
	Cell Line Ontology (CLO)
	Cell line ontology [by Mahadevan] (MCCL)
	Cell Phenotype Ontology (CPO)
	Cell type (CL)
	Cereal Plant Development (GRO_CPD)
	Cereal plant gross anatomy (GRO_CPGA)
	Cerebrotendinous xanthomatosis (CTX)
	Chemical entities of biological interest (CHEBI)
	Chemical Information Ontology (CHEMINF)
	Clinical Measurement Ontology (CMO)
	Coding Symbols for a Thesaurus of Adverse Reaction Terms (CST)
	COG Analysis Ontology (CAO)
	Cognitive Atlas (cogat)
	Cognitive Paradigm Ontology (CogPO)
	Common Anatomy Reference Ontology (CARO)
	Common Terminology Criteria for Adverse Events (CTCAE)
	Comparative Data Analysis Ontology (CDAO)
	Computational Neuroscience Ontology (CNO)
	Computer Assisted Brain Injury Rehabilitation (CABRO)
	Computer-based Patient Record Ontology (CPR)
	CRISP Thesaurus, 2006 (CSP)
	Current Procedural Terminology (CPT)
	Dendritic cell (DC_CL)
	Dengue Fever Ontology (IDODEN)
	DermLex: The Dermatology Lexicon (DermLex)
	Diagnostic Ontology (DiagnosticOnt)
	Dictyostelium discoideum anatomy (DDANAT)
	Drosophila development (FBdv)
	Drosophila gross anatomy (FBbt)
	eagle-i research resource ontology (ERO)
	Electrocardiography Ontology (ECG)
	Emotion Ontology (MFOEM)
	Environment Ontology (ENVO)
	Enzyme Mechanism Ontology (EMO)
	Epilepsy (EpilepOnto)
	Epoch Clinical Trial Ontologies (ClinicalTrialOntology)
	Event (INOH pathway ontology) (IEV)
	Evidence codes (ECO)
	eVOC (Expressed Sequence Annotation for Humans) (EV)
	Experimental Conditions Ontology (XCO)
	Experimental Factor Ontology (EFO)
	Exposure Ontology (ExO)
	Extensible Observation Ontology (OBOE)
	Family Health History Ontology (FHHO)
	Fanconi Anemia (FA) Ontology (IFAR)
	Fission Yeast Phenotype Ontology (FYPO)
	Fly taxonomy (FBsp)
	FlyBase Controlled Vocabulary (FBcv)
	Foundational Model of Anatomy (FMA)
	Fungal gross anatomy (FAO)
	G Protein-Coupled Receptor (GPCR) BioAssays (BAO_GPCR)
	Galen (GALEN)
	Gazetteer (GAZ)
	Gene Expression Ontology (GeXO)
	Gene Ontology (GO)
	Gene Ontology Extension (GO-EXT)
	Gene Regulation Ontology (GRO)
	General Formal Ontology (GFO)
	General Formal Ontology: Biology (GFO-Bio)
	Genome Component Ontology (GCO)
	Genomic Clinical Decision Support - Genomic CDS (Genomic-CDS)
	GeoSpecies Ontology (geospecies)
	Glycomics-Ontology (GlycO)
	Health Level Seven (HL7)
	HEALTH_INDICATORS (HLTHINDICES)
	Healthcare Common Procedure Coding System (HCPCS)
	Hewan Invertebrata (invertebrata)
	Host Pathogen Interactions Ontology (HPIO)
	HUGO (HUGO)
	Human developmental anatomy, abstract version (EHDAA)
	Human developmental anatomy, abstract version, v2 (EHDAA2)
	Human developmental anatomy, timed version (EHDA)
	Human disease ontology (DOID)
	Human Interaction Network Ontology (HINO)
	Human Phenotype Ontology (HP)
	Hymenoptera Anatomy Ontology (HAO)
	ICD-10-PCS (ICD10PCS)
	ICD10 (ICD10)
	ICD10CM (ICD10CM)
	ICPC-2 PLUS (ICPC2P)
	ICPS Network (ICPS)
	Image and Data Quality Assessment Ontology (IDQA)
	IMGT-ONTOLOGY (IMGT)
	Immune Disorder Ontology (ImmDis)
	Infectious Disease Ontology (IDO)
	Influenza Ontology (FLU)
	Information Artifact Ontology (IAO)
	InformedConsentPermissionOntology (ConsentOntology)
	Interaction Network Ontology (INO)
	Interaction Ontology (IxnO)
	International Classification for Nursing Practice (ICNP)
	International Classification of External Causes of Injuries (ICECI)
	International Classification of Diseases (ICD9CM)
	International Classification of Functioning, Disability and Health (ICF) (ICF)
	International Classification of Primary Care (ICPC)
	Kinetic Simulation Algorithm Ontology (KiSAO)
	Leukocyte Surface Markers (LSM)
	Lipid Ontology (LiPrO)
	Loggerhead nesting (LHN)
	Logical Observation Identifier Names and Codes (LNC)
	MaHCO - An MHC Ontology (MHC)
	Maize gross anatomy (ZEA)
	Malaria Ontology (IDOMAL)
	Mammalian phenotype (MP)
	Mass spectrometry (MS)
	Master Drug Data Base (MDDB)
	Measurement Method Ontology (MMO)
	Medaka fish anatomy and development (MFO)
	MedDRA (MDR)
	Medical Diagnostic Categories-Diagnosis Related Groups (MDCDRG)
	Medical Subject Headings (MeSH) (MSH)
	MedlinePlus Health Topics (MEDLINEPLUS)
	Mental Functioning Ontology (MF)
	Metagenome/Microbes Environmental Ontology (MEO)
	Metathesaurus CPT Hierarchical Terms (MTHCH)
	Metathesaurus Version of Minimal Standard Terminology Digestive Endoscopy (MTHMST)
	Metathesaurus Version of Minimal Standard Terminology Digestive Endoscopy, French Translation (MTHMSTFRE)
	Microarray and Gene Expression Data Ontology (MO)
	microRNA Ontology (miRNAO)
	Minimal anatomical terminology (MAT)
	MIxS As RDF (mixs)
	MIxS Controlled Vocabularies (MCV)
	Mobile genetic element ontology (MeGO)
	Molecule role (INOH Protein name/family name ontology) (IMR)
	Mosquito gross anatomy (TGMA)
	Mosquito insecticide resistance (MIRO)
	Mouse adult gross anatomy (MA)
	Mouse Experimental Design Ontology (MEDO)
	Mouse gross anatomy and development (EMAP)
	Mouse pathology (MPATH)
	Multiple alignment (MAO)
	NanoParticle Ontology (NPO)
	National Drug Data File (NDDF)
	National Drug File (NDFRT)
	Natural Products Ontology (NatPrO)
	NCBI organismal classification (NCBITaxon)
	NCI Thesaurus (NCIt)
	Neglected Tropical Disease Ontology (NTDO) (NTDO)
	Neomark Oral Cancer Ontology (NeoMark)
	Neomark Oral Cancer-Centred Ontology (NeoMarkOntology)
	Neural ElectroMagnetic Ontology (NEMO)
	Neural Motor Recovery Ontology (NeuMORE)
	Neural-Immune Gene Ontology (NIGO)
	Neuro Behavior Ontology (NBO)
	Neuroscience Information Framework Standard ontology (nif)
	NIF Cell (NIF_Cell)
	NIF Dysfunction (NIF_Dysfunction)
	NIF-Subcellular (NIF-Subcell)
	NMR-instrument specific component of metabolomics investigations (NMR)
	Non Randomized Controlled Trials Ontology (NonRCTOntology)
	Online Mendelian Inheritance in Man (OMIM)
	Ontology for Biomedical Investigations (OBI)
	Ontology for disease genetic investigation (ODGI)
	Ontology for Drug Discovery Investigations (DDI)
	Ontology for General Medical Science (OGMS)
	Ontology for Genetic Interval (OGI)
	Ontology for Genetic Susceptibility Factor (OGSF)
	Ontology for MicroRNA Target Prediction (OMIT)
	Ontology for Newborn Screening Follow-up and Translational Research (ONSTR)
	Ontology for Parasite LifeCycle (OPL)
	Ontology of Adverse Events (OAE)
	Ontology of Clinical Research (OCRe) (OCRe)
	Ontology of Core Data Mining Entities (OntoDM-core)
	Ontology of Data Mining Investigations (OntoDM-KDD)
	Ontology of Experimental Variables and Values (OoEVV)
	Ontology of General Purpose Datatypes (OntoDT)
	Ontology of Geographical Region (OGR)
	Ontology of Glucose Metabolism Disorder (OGMD)
	Ontology of homology and related concepts in biology (HOM)
	Ontology of Language Disorder in Autism (LDA)
	Ontology of Medically Related Social Entities (OMRSE)
	Ontology of Physical Exercises (OPE)
	Ontology of Physics for Biology (OPB.properties)
	OntoPneumo (OntoPneumo)
	Orphanet Ontology of Rare Diseases (OntoOrpha)
	OWL Version of MeSH (RH-MESH)
	Parasite Experiment Ontology (PEO)
	Pathogen transmission (TRANS)
	Pathway ontology (PW)
	Pediatric Terminology (PedTerm)
	PHArmacogenomic RElationships Ontology (PHARE)
	Pharmacovigilance Ontology (PVOnto)
	Phenotype Fragment Ontology (PFO)
	Phenotypic quality (PATO)
	PhenX Terms (PhenX)
	Phylogenetic Ontology (PhylOnt)
	Physical Medicine and Rehabilitation (PMR)
	PhysicalFields (Field)
	Physician Data Query (PDQ)
	Physico-chemical methods and properties (FIX)
	Physico-chemical process (REX)
	PKO_Re (PKO)
	Plant Anatomy (PO_PAE)
	Plant environmental conditions (EO)
	Plant Ontology (PO)
	Plant Structure Development Stage (PO_PSDS)
	Plant Trait Ontology (TO)
	Platynereis stage ontology (PD_ST)
	PMA 2010 (pma)
	Porifera Ontology (PORO)
	Protein modification (MOD)
	PRotein Ontology (PR)
	Protein Ontology [by Sidhu] (pro-ont)
	Protein-protein interaction (MI)
	Proteomics data and process provenance (ProPreO)
	Proteomics Pipeline Infrastructure for CPTAC (CPTAC)
	PROV-O (prov-o)
	Pseudogene (pseudo)
	Quantitative Imaging Biomarker Ontology (QIBO)
	RadLex (RID)
	Randomized Controlled Trials (RCT) Ontology (RCTOntology)
	RAPID Phenotype Ontology (RPO)
	Rat Strain Ontology (RS)
	Read Codes, Clinical Terms Version 3 (CTV3) (RCD)
	Reference Sequence Annotation (RSA)
	Regulation of Gene Expression Ontolology (ReXO)
	Regulation of Transcription Ontolology (ReTO)
	Reproductive trait and phenotype ontology (REPO)
	RNA ontology (RNAO)
	Role Ontology (RoleO)
	RxNORM (RXNORM)
	Sample processing and separation techniques (SEP)
	SANOU (OntoMA)
	Santa Barbara Coastal Observation Ontology (oboe-sbc)
	Semantic Web for Earth and Environment Technology (SWEET)
	Semantically-integrated human physiome (SemPhysKB-Human)
	SemanticScience Integrated Ontology (SIO)
	Sequence types and features (SO)
	Situation-Based Access Control (SitBAC)
	Skin Physiology Ontology (SPO)
	Sleep Domain Ontology (SDO)
	Smoking Behavior Risk Ontology (SBRO)
	SNOMED Clinical Terms (SNOMEDCT)
	SNP-Ontology (SNPO)
	Solanaceae Phenotype Ontology (SPTO)
	SoyOntology (SOY)
	Spatial Ontology (BSPO)
	Spider Ontology (SPD)
	Student Health Record (SHR)
	Subcellular Anatomy Ontology (SAO) (SAO)
	Suggested Ontology for Pharmacogenomics (SOPHARM)
	Symptom Ontology (SYMP)
	Synapse Ontology (SYN)
	Syndromic Surveillance Ontology (SSO)
	SysMO-JERM (JERM)
	Systems Biology (SBO)
	Systems Chemical Biology/Chemogenomics (Chem2Bio2OWL)
	Taxonomic rank vocabulary (TAXRANK)
	Taxonomy for rehabilitation of knee conditions (TRAK)
	Teleost Anatomy Ontology (TAO)
	Teleost taxonomy (TTO)
	Terminological and ontological Knowledge resources (TOK)
	Terminology for the Description of Dynamics (TEDDY)
	The Biomedical Research Integrated Domain Group (BRIDG) model (BRIDG)
	The Drug Interaction Knowledge Base (dikb-evidence)
	ThomCan: Upper-level Cancer Ontology (ThomCan)
	Tick gross anatomy (TADS)
	Time Event Ontology (TEO)
	Tissue Microarray Ontology (TMA)
	Top-Menelas (Top-Menelas)
	Traditional Medicine Constitution Value Set (TM-CONST)
	Traditional Medicine Meridian Value Sets (TM-MER)
	Traditional Medicine Other Factors Value Set (TM-OTHER-FACTORS)
	Traditional Medicine Signs and Symptoms Value Set (TM-SIGNS-AND-SYMPTS)
	Translational Medicine Ontology (TMO)
	Tribolium Ontology (TrOn)
	uni-ece (uni-ece)
	Units of measurement (UO)
	Units Ontology (UnitsOntology)
	Vaccine Ontology (VO)
	Variation Ontology (VariO)
	vertebrate Homologous Organ Groups (vHOG)
	Vertebrate Skeletal Anatomy Ontology (VSAO)
	Vertebrate Trait Ontology (VT)
	Veterans Health Administration National Drug File (VANDF)
	Vital Sign Ontology (VSO)
	VIVO (vivo)
	Web-Service Interaction Ontology (WSIO)
	Wheat trait (CO_Wheat)
	WHO Adverse Reaction Terminology (WHO)
	XEML Environment Ontology (XeO)
	Xenopus anatomy and development (XAO)
	Yeast phenotypes (YPO)
	Zebrafish anatomy and development (ZFA)

Annotator

Select Ontologies

Select Multiple Ontologies close

Annotations Results are filtered by:

Annotations
Results are filtered by: