Human Interaction Network Ontology

Last uploaded: June 27, 2014
Preferred Name

Methylation
Synonyms
Definitions

Authored: Jassal, B, 2005-02-03 14:13:47 Edited: Jassal, B, 2008-05-19 12:57:01 Methylation is a common but minor pathway of Phase II conjugation compared to glucuronidation or sulfonation. The cofactor used in methylation conjugation is S-adenosylmethionine (SAM). SAM is the second most widely used enzyme substrate after ATP and is involved in a wide range of important biological processes. SAM is sythesized from methionine's reaction with ATP, catalyzed by methionine adenosyltransferase (MAT). There are two genes, MAT1A and MAT2A, which encode for two homologous MAT catalytic subunits, 1 and 2.<br>During conjugation with nucleophilic substrates, the methyl group attached to the sulfonium ion of SAM is transferred to the substrate forming the conjugate. SAM, having lost the methyl moiety, is converted to S-adenosylhomocysteine (SAH). SAH can be hydrolyzed to form adenosine and homocysteine. Homocysteine can either be converted to glutathione or methylated to form methionine, thus forming the starting point for SAM synthesis and completing the cycle.<br>Fuctional groups attacked are phenols, catechols, aliphatic and aromatic amines and sulfhydryl-containing groups. The enzymes that catalyze the transfer of the methyl group to these functional groups are the methyltransferases (MT). MTs are small, cytosolic, monomeric enzymes that utilize SAM as a methyl donor. There are many MTs but the best studied ones are named on the basis of their prototypical substrates: <i><b>COMT</b> (catechol O-methyltransferase)</i>, <i><b>TPMT</b> (thiopurine methyltransferase)</i>, <i><b>TMT</b> (thiol methyltransferase)</i>, <i><b>HNMT</b> (histamine N-methyltransferase)</i> and <i><b>NNMT</b> (nicotinamide N-methyltransferase)</i>. An example of each enzyme mentioned is given. In each case, a typical substrate for the enzyme is shown.

ID

http://purl.obolibrary.org/obo/HINO_0016335

comment

Authored: Jassal, B, 2005-02-03 14:13:47

Edited: Jassal, B, 2008-05-19 12:57:01

Methylation is a common but minor pathway of Phase II conjugation compared to glucuronidation or sulfonation. The cofactor used in methylation conjugation is S-adenosylmethionine (SAM). SAM is the second most widely used enzyme substrate after ATP and is involved in a wide range of important biological processes. SAM is sythesized from methionine's reaction with ATP, catalyzed by methionine adenosyltransferase (MAT). There are two genes, MAT1A and MAT2A, which encode for two homologous MAT catalytic subunits, 1 and 2.<br>During conjugation with nucleophilic substrates, the methyl group attached to the sulfonium ion of SAM is transferred to the substrate forming the conjugate. SAM, having lost the methyl moiety, is converted to S-adenosylhomocysteine (SAH). SAH can be hydrolyzed to form adenosine and homocysteine. Homocysteine can either be converted to glutathione or methylated to form methionine, thus forming the starting point for SAM synthesis and completing the cycle.<br>Fuctional groups attacked are phenols, catechols, aliphatic and aromatic amines and sulfhydryl-containing groups. The enzymes that catalyze the transfer of the methyl group to these functional groups are the methyltransferases (MT). MTs are small, cytosolic, monomeric enzymes that utilize SAM as a methyl donor. There are many MTs but the best studied ones are named on the basis of their prototypical substrates: <i><b>COMT</b> (catechol O-methyltransferase)</i>, <i><b>TPMT</b> (thiopurine methyltransferase)</i>, <i><b>TMT</b> (thiol methyltransferase)</i>, <i><b>HNMT</b> (histamine N-methyltransferase)</i> and <i><b>NNMT</b> (nicotinamide N-methyltransferase)</i>. An example of each enzyme mentioned is given. In each case, a typical substrate for the enzyme is shown.

definition source

Reactome, http://www.reactome.org

Pubmed15130560

Pubmed10331075

Pubmed10898761

label

Methylation

located_in

http://purl.obolibrary.org/obo/NCBITaxon_9606

prefixIRI

HINO:0016335

prefLabel

Methylation

seeAlso

ReactomeREACT_6946

GENE ONTOLOGYGO:0032259

Reactome Database ID Release 43156581

subClassOf

http://purl.obolibrary.org/obo/INO_0000021

has_part

http://purl.obolibrary.org/obo/HINO_0025109

http://purl.obolibrary.org/obo/HINO_0025108

http://purl.obolibrary.org/obo/HINO_0024196

http://purl.obolibrary.org/obo/HINO_0024194

http://purl.obolibrary.org/obo/HINO_0024232

http://purl.obolibrary.org/obo/HINO_0025111

http://purl.obolibrary.org/obo/HINO_0025113

http://purl.obolibrary.org/obo/HINO_0025110

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Mapping To Ontology Source
http://purl.obolibrary.org/obo/GO_0032259 FYPO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.149.465.040.538 RH-MESH LOOM
https://w3id.org/biolink/vocab/GeneOrGeneProductOrChemicalEntityAspectEnum#methylation BIOLINK LOOM
http://purl.obolibrary.org/obo/GO_0032259 GO-EXT LOOM
http://purl.obolibrary.org/obo/GO_0032259 PLANP LOOM
http://purl.obolibrary.org/obo/GO_0032259 HOIP LOOM
http://purl.obolibrary.org/obo/GO_0032259 XPO LOOM
http://purl.obolibrary.org/obo/GO_0032259 PHAGE LOOM
http://purl.obolibrary.org/obo/GO_0032259 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0032259 BERO LOOM
http://purl.obolibrary.org/obo/GO_0032259 TXPO LOOM
http://purl.obolibrary.org/obo/GO_0032259 CHRO LOOM
http://purl.obolibrary.org/obo/GO_0032259 UPHENO LOOM
http://purl.obolibrary.org/obo/GO_0032259 FTC LOOM
http://purl.obolibrary.org/obo/GO_0032259 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0032259 CHIRO LOOM
http://purl.obolibrary.org/obo/GO_0032259 FYPO LOOM
http://purl.obolibrary.org/obo/GO_0032259 REGN_GO LOOM
http://purl.obolibrary.org/obo/GO_0032259 IXNO LOOM
http://purl.obolibrary.org/obo/GO_0032259 GO LOOM
http://purl.obolibrary.org/obo/GO_0032259 ZP LOOM
http://purl.obolibrary.org/obo/OMIT_0009803 OMIT LOOM
http://purl.obolibrary.org/obo/MOP_0000364 BERO LOOM
http://purl.obolibrary.org/obo/MOP_0000364 RXNO LOOM
http://purl.obolibrary.org/obo/MOP_0000364 MOP LOOM
http://purl.bioontology.org/ontology/CSP/0095-1667 CRISP LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D008745 RH-MESH LOOM
http://purl.obolibrary.org/obo/NCIT_C16848 BERO LOOM
http://scai.fraunhofer.de/PWDICT#ID1375 PTS LOOM
http://biomodels.net/SBO/SBO_0000214 SBO LOOM
http://biomodels.net/SBO/SBO_0000214 BKO LOOM
http://purl.bioontology.org/net/brunel/panda#Methylation PANDA LOOM
http://www.bootstrep.eu/ontology/GRO#Methylation GRO LOOM
http://www.stanford.edu/~coulet/phare.owl#Methylation PHARE LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0025723 OCHV LOOM
http://purl.jp/bio/4/id/200906043303609129 IOBC LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.111.087.029.538 RH-MESH LOOM
http://www.pepathway.org/peo/1.2#Methylation PE-O LOOM
http://www.phoc.org.cn/pmo/class/PMO_00061740 PMAPP-PMO LOOM
http://localhost/plosthes.2017-1#1406 PLOSTHES LOOM
http://purl.bioontology.org/ontology/MESH/D008745 MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.607.750.040.538 RH-MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.149.115.029.538 RH-MESH LOOM
http://scai.fraunhofer.de/AlzheimerOntology#Methylation ADMO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16848 NCIT LOOM
http://id.nlm.nih.gov/mesh/D008745 MDM LOOM
http://purl.obolibrary.org/obo/MESH_D008745 BERO LOOM
http://www.projecthalo.com/aura#Methylation AURA LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#8052 OCHV LOOM
http://purl.org/obo/owl/GO#GO_0032259 BIOMODELS LOOM
http://www.semanticweb.org/DMO#methylation ADMO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G03.495.130.538 RH-MESH LOOM