Common Anatomy Reference Ontology

Last uploaded: March 15, 2023
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Preferred Name

serotonin
Synonyms

InChIKey=QZAYGJVTTNCVMB-UHFFFAOYSA-N

InChI=1S/C10H12N2O/c11-4-3-7-6-12-10-2-1-8(13)5-9(7)10/h1-2,5-6,12-13H,3-4,11H2

5-Hydroxytryptamine

thrombocytin

3-(2-Aminoethyl)-1H-indol-5-ol

thrombotonin

NCCc1c[nH]c2ccc(O)cc12

5-HT

C10H12N2O

Enteramine

serotonine

3-(2-aminoethyl)-1H-indol-5-ol

SEROTONIN

Serotonin
Definitions

The 5-hydroxy derivative of tryptamine. A primary amino compound that is the 5-hydroxy derivative of tryptamine.
ID

http://purl.obolibrary.org/obo/CHEBI_28790
charge

0
database_cross_reference

PMID:18593914

PMID:24136337

KEGG:C00780

Wikipedia:Serotonin

MetaCyc:SEROTONIN

LINCS:LSM-6589

Reaxys:143524

Beilstein:143524

CAS:50-67-9

PDBeChem:SRO

Gmelin:1861995

PMID:22770225

HMDB:HMDB0000259

KNApSAcK:C00001429
definition

The 5-hydroxy derivative of tryptamine.

A primary amino compound that is the 5-hydroxy derivative of tryptamine.
formula

C10H12N2O
has characteristic

http://purl.obolibrary.org/obo/CHEBI_25512

http://purl.obolibrary.org/obo/CHEBI_77746

http://purl.obolibrary.org/obo/CHEBI_75771
has role

http://purl.obolibrary.org/obo/CHEBI_25512

http://purl.obolibrary.org/obo/CHEBI_77746

http://purl.obolibrary.org/obo/CHEBI_75771
has_alternative_id

CHEBI:26652

CHEBI:49894

CHEBI:1420
has_exact_synonym

3-(2-aminoethyl)-1H-indol-5-ol

SEROTONIN

Serotonin
has_functional_parent

http://purl.obolibrary.org/obo/CHEBI_16765
has_obo_namespace

chebi_ontology
has_related_synonym

InChIKey=QZAYGJVTTNCVMB-UHFFFAOYSA-N

InChI=1S/C10H12N2O/c11-4-3-7-6-12-10-2-1-8(13)5-9(7)10/h1-2,5-6,12-13H,3-4,11H2

5-Hydroxytryptamine

thrombocytin

3-(2-Aminoethyl)-1H-indol-5-ol

thrombotonin

NCCc1c[nH]c2ccc(O)cc12

5-HT

C10H12N2O

Enteramine

serotonine
id

CHEBI:28790
in_subset

http://purl.obolibrary.org/obo/chebi#3_STAR
inchi

InChI=1S/C10H12N2O/c11-4-3-7-6-12-10-2-1-8(13)5-9(7)10/h1-2,5-6,12-13H,3-4,11H2
inchikey

QZAYGJVTTNCVMB-UHFFFAOYSA-N
is_conjugate_base_of

http://purl.obolibrary.org/obo/CHEBI_350546
label

serotonin
mass

176.215
monoisotopicmass

176.09496
notation

CHEBI:28790
prefLabel

serotonin
smiles

C1=CC(=CC=2C(=CNC12)CCN)O
subClassOf

http://purl.obolibrary.org/obo/CHEBI_27162

http://purl.obolibrary.org/obo/CHEBI_33853

http://purl.obolibrary.org/obo/CHEBI_84729

http://purl.obolibrary.org/obo/CHEBI_50994

http://purl.obolibrary.org/obo/CHEBI_25375
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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/CHEBI_28790 FOODON SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 NPOKB SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 UBERON SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 CCONT SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 FOVT SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 DTO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 RBO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 EFO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 XPO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 PCL SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 PATO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 NIFDYS SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 CDNO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 BERO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 EFO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 HUPSON SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 HHEAR SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 BIOMODELS SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 UPHENO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 CHEBI SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 ECAO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 ECTO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 HINO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 ZP SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 AISM SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 NMDCO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28790 OBA SAME_URI
http://purl.bioontology.org/ontology/RCD/X80Eu RCD LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D03.438.473.914.814 RH-MESH LOOM
http://purl.bioontology.org/ontology/RXNORM/1311214 RXNORM LOOM
http://purl.obolibrary.org/obo/exmo.owl/EXM_0000374 EXMO LOOM
https://www.fns-cloud.eu/foodComponents/FNS_H_0000003432 FNS-H LOOM
http://purl.jp/bio/4/id/200906081125829640 IOBC LOOM
http://purl.bioontology.org/ontology/LNC/MTHU005043 LOINC LOOM
http://uri.neuinfo.org/nif/nifstd/sao711465902 NPOKB LOOM
http://uri.neuinfo.org/nif/nifstd/sao711465902 NIFSTD LOOM
http://purl.obolibrary.org/obo/IMR_0100123 HOIP LOOM
http://purl.obolibrary.org/obo/IMR_0100123 TXPO LOOM
http://purl.org/sig/ont/fma/fma67245 FMA LOOM
http://purl.obolibrary.org/obo/NCIT_C828 BERO LOOM
http://purl.obolibrary.org/obo/MESH_D012701 BERO LOOM
http://purl.bioontology.org/ontology/CSP/0397-6790 CRISP LOOM
http://www.case.edu/EpilepsyOntology.owl#Serotonin EPSO LOOM
http://purl.bioontology.org/ontology/CPT/84260 CPT LOOM
http://localhost/plosthes.2017-1#2632 PLOSTHES LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C828 NCIT LOOM
http://doe-generated-ontology.com/OntoAD#C0036751 ONTOAD LOOM
http://purl.org/obo/owlapi/fma#FMA_67245 BIOMODELS LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D23.469.050.650 RH-MESH LOOM
http://purl.obolibrary.org/obo/OMIT_0013597 OMIT LOOM
http://www.projecthalo.com/aura#Serotonin AURA LOOM
http://ccdb.ucsd.edu/SAO/1.2#sao711465902 SAO LOOM
http://purl.bioontology.org/ontology/LNC/LP14693-3 LOINC LOOM
http://purl.bioontology.org/ontology/MESH/D012701 MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D02.092.211.215.801.852 RH-MESH LOOM
http://scai.fraunhofer.de/MSOntology#Serotonin MSO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 FOODON LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 NPOKB LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 UBERON LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 CCONT LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 FOVT LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 DTO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 RBO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 EFO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 XPO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 PCL LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 PATO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 NIFDYS LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 GO-PLUS LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 CDNO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 BERO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 EFO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 HUPSON LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 HHEAR LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 BIOMODELS LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 UPHENO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 CHEBI LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 NIFSTD LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 ECAO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 HINO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 ZP LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 AISM LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 NMDCO LOOM
http://purl.obolibrary.org/obo/CHEBI_28790 OBA LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#11221 OCHV LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0036751 OCHV LOOM
http://www.co-ode.org/ontologies/galen#Serotonin GALEN LOOM
http://purl.bioontology.org/ontology/SNMI/F-CB040 SNMI LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/33635003 SNOMEDCT LOOM
http://purl.obolibrary.org/obo/UPa_UPC00780 UPA LOOM
http://purl.bioontology.org/ontology/NDDF/003368 NDDF LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Serotonin APANEUROCLUSTER LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Serotonin APAONTO LOOM
http://www.phoc.org.cn/pmo/class/PMO_00016119 PMAPP-PMO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D012701 RH-MESH LOOM
https://go.drugbank.com/drugs/DB08839 MDM LOOM
http://stirdf.jst.go.jp/id/200907004596085330 IOBC LOOM