Provisional Cell Ontology

Last uploaded: January 15, 2024
Preferred Name

cell death

Synonyms

accidental cell death

necrosis

Definitions

This term should not be used for direct annotation, it is currently kept in GO as a placeholder for describing cell death phenotypes in uPHENO. When information is provided on a programmed cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'). Unintentional cell death, i.e. cell death caused by injury, ageing, or cell phenotypes observed as a result of a pathological mutation in an essential gene should NOT be annotated using GO terms. Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).

ID

http://purl.obolibrary.org/obo/GO_0008219

comment

This term should not be used for direct annotation, it is currently kept in GO as a placeholder for describing cell death phenotypes in uPHENO. When information is provided on a programmed cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'). Unintentional cell death, i.e. cell death caused by injury, ageing, or cell phenotypes observed as a result of a pathological mutation in an essential gene should NOT be annotated using GO terms.

definition

Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).

has_related_synonym

accidental cell death

necrosis

hasOBONamespace

biological_process

IAO_0000233

https://github.com/geneontology/go-ontology/issues/24680

id

GO:0008219

inSubset

http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate

label

cell death

notation

GO:0008219

prefLabel

cell death

subClassOf

http://purl.obolibrary.org/obo/GO_0009987

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/GO_0008219 MAXO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 RBO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 FYPO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 CL SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 UBERON SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 OBA SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 EFO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 NIGO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 OAE SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 GO-EXT SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 CLO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 PLANP SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 GCBO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 FOVT SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 HOIP SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 OBI_BCGO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 XPO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 PHAGE SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 CMPO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 PATO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 BAO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 NIFDYS SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 DPO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 BERO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 HHEAR SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 TXPO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 INO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 UPHENO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 OCVDAE SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 FTC SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 KTAO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 PHIPO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 REGN_GO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 GO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 IDOMAL SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 HINO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 IDODEN SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 ZP SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 AISM SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 NMDCO SAME_URI
http://purl.obolibrary.org/obo/GO_0008219 CL LOOM
http://purl.obolibrary.org/obo/GO_0008219 UBERON LOOM
http://purl.obolibrary.org/obo/GO_0008219 OBA LOOM
http://purl.obolibrary.org/obo/GO_0008219 EFO LOOM
http://purl.obolibrary.org/obo/GO_0008219 MAXO LOOM
http://purl.obolibrary.org/obo/GO_0008219 RBO LOOM
http://purl.obolibrary.org/obo/GO_0008219 FYPO LOOM
http://purl.org/obo/owl/GO#GO_0008219 NPO LOOM
http://purl.org/obo/owl/GO#GO_0008219 BIOMODELS LOOM
http://www.bootstrep.eu/ontology/GRO#CellDeath GRO LOOM
http://doe-generated-ontology.com/OntoAD#C0007587 ONTOAD LOOM
http://localhost/plosthes.2017-1#5783 PLOSTHES LOOM
http://regenbase.org/ontology#RB_0000152 RB LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G04.299.139 RH-MESH LOOM
http://purl.obolibrary.org/obo/MPATH_2 MPATH LOOM
http://purl.obolibrary.org/obo/MESH_D016923 BERO LOOM
http://www.ustb.edu.cn/thesauri/tocr/v1/data#C571345044435365904 ACVD_ONTOLOGY LOOM
http://purl.obolibrary.org/obo/IEV_0000097 PTS LOOM
http://purl.obolibrary.org/obo/APO_0000312 APO LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0007587 OCHV LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D016923 RH-MESH LOOM
http://www.semanticweb.org/ADMO#cellDeath ADMO LOOM
http://cbo.biocomplexity.indiana.edu/svn/cbo/trunk/CBO_1_1_2.owl#CellDeath CBO LOOM
http://purl.bioontology.org/ontology/MEDDRA/10057248 MEDDRA LOOM
http://purl.bioontology.org/ontology/CSP/0599-7346 CRISP LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#2584 OCHV LOOM
http://scai.fraunhofer.de/CSEO#CSEO_00000818 CSEO LOOM
http://id.nlm.nih.gov/mesh/D016923 MDM LOOM
http://purl.jp/bio/4/id/200906029557537192 IOBC LOOM
http://purl.obolibrary.org/obo/OMIT_0017353 OMIT LOOM
http://purl.obolibrary.org/obo/GO_0008219 NIGO LOOM
http://purl.obolibrary.org/obo/GO_0008219 OAE LOOM
http://purl.obolibrary.org/obo/GO_0008219 GO-EXT LOOM
http://purl.obolibrary.org/obo/GO_0008219 CLO LOOM
http://purl.obolibrary.org/obo/GO_0008219 PLANP LOOM
http://purl.obolibrary.org/obo/GO_0008219 GCBO LOOM
http://purl.obolibrary.org/obo/GO_0008219 FOVT LOOM
http://purl.obolibrary.org/obo/GO_0008219 HOIP LOOM
http://purl.obolibrary.org/obo/GO_0008219 OBI_BCGO LOOM
http://purl.obolibrary.org/obo/GO_0008219 XPO LOOM
http://purl.obolibrary.org/obo/GO_0008219 PHAGE LOOM
http://purl.obolibrary.org/obo/GO_0008219 CMPO LOOM
http://purl.obolibrary.org/obo/GO_0008219 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0008219 PATO LOOM
http://purl.obolibrary.org/obo/GO_0008219 BAO LOOM
http://purl.obolibrary.org/obo/GO_0008219 NIFDYS LOOM
http://purl.obolibrary.org/obo/GO_0008219 DPO LOOM
http://purl.obolibrary.org/obo/GO_0008219 BERO LOOM
http://purl.obolibrary.org/obo/GO_0008219 HHEAR LOOM
http://purl.obolibrary.org/obo/GO_0008219 TXPO LOOM
http://purl.obolibrary.org/obo/GO_0008219 INO LOOM
http://purl.obolibrary.org/obo/GO_0008219 UPHENO LOOM
http://purl.obolibrary.org/obo/GO_0008219 OCVDAE LOOM
http://purl.obolibrary.org/obo/GO_0008219 FTC LOOM
http://purl.obolibrary.org/obo/GO_0008219 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0008219 KTAO LOOM
http://purl.obolibrary.org/obo/GO_0008219 PHIPO LOOM
http://purl.obolibrary.org/obo/GO_0008219 REGN_GO LOOM
http://purl.obolibrary.org/obo/GO_0008219 GO LOOM
http://purl.obolibrary.org/obo/GO_0008219 IDOMAL LOOM
http://purl.obolibrary.org/obo/GO_0008219 HINO LOOM
http://purl.obolibrary.org/obo/GO_0008219 IDODEN LOOM
http://purl.obolibrary.org/obo/GO_0008219 ZP LOOM
http://purl.obolibrary.org/obo/GO_0008219 AISM LOOM
http://purl.obolibrary.org/obo/GO_0008219 NMDCO LOOM
http://www.semanticweb.org/ontologies/2008/8/SPO_lightweight_merged.owl#CellDeath SPO LOOM
http://www.semanticweb.org/ontologies/STO.owl#OWLClass_6e11a25e_c888_474f_98db_38865e6df5ce STO-DRAFT LOOM
http://www.semanticweb.org/ontologies/STO.owl#OWLClass_6e11a25e_c888_474f_98db_38865e6df5ce CVAO LOOM
http://purl.bioontology.org/ontology/MESH/D016923 MESH LOOM
http://www.phoc.org.cn/pmo/class/PMO_00064405 PMAPP-PMO LOOM