NGS ontology

Last uploaded: March 13, 2017
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Preferred Name

Sequence assembly
Synonyms
ID

http://edamontology.org/operation_0310
comment

For example, assemble overlapping reads from paired-end sequencers into contigs (a contiguous sequence corresponding to read overlaps). Or assemble contigs, for example ESTs and genomic DNA fragments, depending on the detected fragment overlaps.
created_in

beta12orEarlier
def

"Combine (align and merge) overlapping fragments of a DNA sequence to reconstruct the original sequence." [http://edamontology.org]
definition_editor

Jon Ison
imported from

http://purl.obolibrary.org/obo/swo.owl
label

Sequence assembly
namespace

operation
prefixIRI

ns1:operation_0310
prefLabel

Sequence assembly
subset

bioinformatics

edam

operations
subClassOf

http://purl.obolibrary.org/obo/NGS_0000006
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http://edamontology.org/operation_0310 EDAM SAME_URI
http://edamontology.org/operation_0310 ITO SAME_URI
http://purl.obolibrary.org/obo/SO_0000353 SO LOOM
http://semanticscience.org/resource/sequence-assembly MATERIALSMINE LOOM
http://semanticscience.org/resource/SIO_000989 SIO LOOM
http://purl.obolibrary.org/obo/SO_0000353 HOIP LOOM
http://gbol.life/0.1/SequenceAssembly GBOL LOOM
http://purl.obolibrary.org/obo/SO_0000353 PDRO LOOM
http://purl.obolibrary.org/obo/SO_0000353 EUPATH LOOM
http://purl.obolibrary.org/obo/SO_0000353 OBI LOOM
http://purl.obolibrary.org/obo/SO_0000353 NGBO LOOM
http://purl.obolibrary.org/obo/SO_0000353 OBCS LOOM
http://purl.obolibrary.org/obo/SO_0000353 ONE LOOM
http://purl.obolibrary.org/obo/SO_0000353 EGO LOOM
http://purl.obolibrary.org/obo/SO_0000353 OBI_IEE LOOM
http://purl.obolibrary.org/obo/SO_0000353 NIFSTD LOOM
http://purl.obolibrary.org/obo/SO_0000353 GENEPIO LOOM
http://edamontology.org/topic_0196 BERO LOOM
http://edamontology.org/topic_0196 EDAM LOOM
http://edamontology.org/topic_0196 ITO LOOM
http://edamontology.org/topic_0196 BMT LOOM
http://semanticscience.org/resource/SIO_000989 HHEARP LOOM
http://semanticscience.org/resource/SIO_000989 CHEAR LOOM
http://semanticscience.org/resource/SIO_000989 BIOMO LOOM
http://semanticscience.org/resource/SIO_000989 SCO LOOM
http://semanticscience.org/resource/SIO_000989 HHEAR LOOM
http://semanticscience.org/resource/SIO_000989 HASCO LOOM
http://edamontology.org/data_0925 EDAM LOOM
http://edamontology.org/data_0925 ITO LOOM
http://edamontology.org/operation_0310 EDAM LOOM
http://edamontology.org/operation_0310 ITO LOOM