loading... loading...| Number of classes: | 3294 |
|---|---|
| Number of individuals: | 0 |
| Number of properties: | 12 |
| Maximum depth: | 8 |
| Maximum number of children: | 1074 |
| Average number of children: | 6 |
| Classes with a single child: | 175 |
| Classes with more than 25 children: | 15 |
| Classes with no definition: | 8 |
Visits Download as CSV
Details
| Acronym | EDAM |
|---|---|
| Visibility | Public |
| BioPortal PURL | http://purl.bioontology.org/ontology/EDAM |
| Description | EDAM is a comprehensive ontology of well-established, familiar concepts that are prevalent within bioinformatics and computational biology, including types of data and data identifiers, data formats, operations and topics. EDAM is a simply-structured ontology - essentially a set of concepts with preferred terms and synonyms, definitions, and some additional information - organised into a simple and intuitive hierarchy for convenient use by information curators, software developers and end-users. EDAM is suitable for large-scale semantic annotations and categorization of diverse bioinformatics resources. EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries. |
| Status | Production |
| Format | OWL |
| Contact |
Matúš Kalaš, matus.kalas@uib.no Jon Ison, jison@cbs.dtu.dk EDAM developers, edam@elixir-dk.org Hervé Ménager, hmenager@pasteur.fr Veit Schwämmle, veits@bmb.sdu.dk |
| Home Page | http://edamontology.org |
| Publications Page | http://doi.org/10.1093/bioinformatics/btt113 |
| Documentation Page | https://edamontologydocs.readthedocs.io |
| Categories | Biomedical Resources, Genomic and Proteomic, Other, Vocabularies |
| Groups |
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Submissions
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 1.18 (Parsed, Indexed, Metrics, Annotator) | 07/04/2017 | 07/06/2017 | OWL | CSV | RDF/XML | Diff |
| 1.17 (Archived) | 04/27/2017 | 04/28/2017 | OWL | Diff |
| 1.16 (Archived) | 10/31/2016 | 11/01/2016 | OWL | Diff |
| 1.15 (Archived) | 05/16/2016 | 05/16/2016 | OWL | Diff |
| 1.14 (Archived) | 02/26/2016 | 02/26/2016 | OWL | Diff |
| 1.13 (Archived) | 02/09/2016 | 02/08/2016 | OWL | Diff |
| 1.12 (Archived) | 12/18/2015 | 01/06/2016 | OWL | Diff |
| 1.11 (Archived) | 07/09/2015 | 07/09/2015 | OWL | Diff |
| 1.10 (Archived) | 07/03/2015 | 07/03/2015 | OWL | Diff |
| 1.10 (Archived) | 07/03/2015 | 07/03/2015 | OWL | Diff |
| 1.9 (Archived) | 02/02/2015 | 02/02/2015 | OWL | Diff |
| 1.8 (Archived) | 12/16/2014 | 12/16/2014 | OWL | Diff |
| 1.7 (Archived) | 12/08/2014 | 12/08/2014 | OWL | Diff |
| 1.6 (Archived) | 11/18/2014 | 11/18/2014 | OWL | Diff |
| 1.5 (Archived) | 11/14/2014 | 11/14/2014 | OWL | Diff |
| 1.4 (Archived) | 10/06/2014 | 09/26/2014 | OWL | Diff |
| 1.3 (Archived) | 02/20/2014 | 02/18/2014 | OWL | Diff |
| 1.2 (Archived) | 12/14/2012 | 12/14/2012 | OWL | Diff |
| 1.1 (Archived) | 07/05/2012 | 12/10/2012 | OBO | Diff |
| 1 (Archived) | 01/13/2012 | 01/20/2012 | OBO |
| Beta13 (Archived) | 12/05/2011 | 12/05/2011 | OBO |
| beta12 (Archived) | 06/17/2011 | 06/17/2011 | OBO |
| beta11 (Archived) | 01/22/2011 | 01/22/2011 | OBO |
| beta10 (Archived) | 07/10/2010 | 12/01/2010 | OBO |
| beta09 (Archived) | 07/10/2010 | 10/07/2010 | OBO |
| beta08 (Archived) | 05/28/2010 | 08/18/2010 | OBO |
| beta07 (Archived) | 05/28/2010 | 05/28/2010 | OBO |
| beta05 (Archived) | 06/11/2010 | 05/14/2010 | OBO |
| more... | |||
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Biomedical Topics Ontology
- Description: An ontology of biological and biomedical topics, created from merging the EDAM Topics sub-ontology with auxiliary topics that are out of scope of EDAM.
- Created By: Jon Ison, jison@ebi.ac.uk
| Submission | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 1.4 (Parsed, Indexed, Metrics, Annotator) | 10/06/2014 | 10/06/2014 | OWL | CSV | RDF/XML | Diff |
| 1.4 (Archived) | 10/06/2014 | 10/06/2014 | OWL | Diff |
| 1.4 (Archived) | 10/06/2014 | 10/06/2014 | OWL | Diff |
| unknown (Archived) | 09/26/2014 | 09/26/2014 | OWL | Diff |
| unknown (Archived) | 09/26/2014 | 09/26/2014 | OWL |
EDAM Topics Subset
Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
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BioXSD
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BioXSD defines exchange formats of basic bioinformatics types...
BioXSD defines exchange formats of basic bioinformatics types of data. It is a rich, but not too complicated XML-Schema-based format for biopolymer sequences, feature records, alignments, references to resources, and identifiers. Semantics of BioXSD type definitions is given via SAWSDL annotation with EDAM, RDFS, and DublinCore. In addition, BioXSD supports rich annotation of data by any public ontology concepts.
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Matus Kalas, Edita Karosiene, Pal Puntervoll, Sveinung...
Matus Kalas, Edita Karosiene, Pal Puntervoll, Sveinung Gundersen, Jon Ison, Christophe Blanchet, Kristoffer Rapacki, Inge Jonassen ...
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University of Bergen, Danish Technical University, CNRS, EBI ... |
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Common Workflow Language
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The Common Workflow language is a multi-vendor working group...
The Common Workflow language is a multi-vendor working group consisting of various organizations and individuals that have an interest in portability of data analysis workflows. Our goal is to create specifications that enable data scientists to describe analysis tools and workflows that are powerful, easy to use, portable, and support reproducibility.
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Computational Biology Institute of Montpellier
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Modeling, processing and analysis of large scale data in biology, health, agronomy and environment
Modeling, processing and analysis of large scale data in biology, health, agronomy and environment
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Pierre Larmande (pierre.larmande@ird.fr)
Pierre Larmande (pierre.larmande@ird.fr)
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University of Montpellier - LIRMM - CNRS |
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EMBOSS
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The European Molecular Biology Open Software Suite (EMBOSS) is...
The European Molecular Biology Open Software Suite (EMBOSS) is a well established, high quality package of open source software tools for molecular biology.
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Peter Rice, Alan Bleasby, Jon Ison, Mahmut Uludag
Peter Rice, Alan Bleasby, Jon Ison, Mahmut Uludag
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EMBL-EBI |
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eSysbio
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eSysbio is a project for developing an online workbench for...
eSysbio is a project for developing an online workbench for collaborative computational biology research. It provides a secure Web-based workspace where researchers can analyse and share their data. It is available in pre-alpha version.The aims of eSysbio are:1. To enable efficient interdisciplinary life science research2. To ease analysis of complex biological data3. To allow efficient use of public data and analysis tools4. To automatically document in silico experiments for reproducible science For the analyses of their data, users of eSysbio can use any external tools that have an interoperable SOAP Web service interface. In addition, users can use their custom R scripts, or those shared with other users. It allows complex analyses by composing Web services and R scripts into custom workflows.eSysbio focusses on making collaborations smooth: the strong side of eSysbio is the functionality for sharing data, tools, script, and workflows within custom groups of users.
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Kidane Tekle, Hakon Sagehaug, Matus Kalas, Siv Midtun Hollup,...
Kidane Tekle, Hakon Sagehaug, Matus Kalas, Siv Midtun Hollup, Michael Dondrup, Anne-Kristin Stavrum, Pawel Sztromwasser, Armin Topfer, Kjell Petersen, Inge Jonassen, Pal Puntervoll
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University of Bergen |
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SEQwiki
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The SEQanswers wiki (SEQwiki) is a wiki database that provides...
The SEQanswers wiki (SEQwiki) is a wiki database that provides an extensive catalogue of tools, technologies and tutorials for high-throughput sequencing (HTS), including information about HTS service providers.
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Jing-Woei Li1, Keith Robison, Marcel Martin, Andreas Sjdin,...
Jing-Woei Li1, Keith Robison, Marcel Martin, Andreas Sjdin, Bjrn Usadel, Matthew Young, Eric C. Olivares, and Dan M. Bolser
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NA |
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