Beta cell genomics database provides searches and tools to explore detailed information about genes, transcripts, gene interactions, genomic regions, and beta cell related functional genomics studies.

Beta Cell Biology Consortium

The Bioinformatics Web Services ontology (OBIws) is an ontology that extends the Ontology for Biomedical Investigations (OBI) to build an Ontology that supports consistent annotation of Bioinformatics Web services.

Jie Zheng, Alok Dhamanaskar

Modeling, processing and analysis of large scale data in biology, health, agronomy and environment

Pierre Larmande (pierre.larmande@ird.fr)

An Online Informatics Resource for Dictyostelium.

Fantom5 cage cluster as an nanopublications

FishMap is a unified and centralized resource for storage, retrieval, and display of genomic information of zebrafish.

The FlyBase project is carried out by a consortium of Drosophila researchers and computer scientists at:Harvard University, University of Cambridge (UK), Indiana University and the University of New Mexico.

As an information resource, Gramene's purpose is to provide added value to data sets available within the public sector, which will facilitate researchers' ability to understand the grass genomes and take advantage of genomic sequence known in one species for identifying and understanding corresponding genes, pathways and phenotypes in other grass species.

SPARQL interface to the RDF version of Microbial Genome Database for Comparative Analysis (MBGD)

Hirokazu Chiba, Hiroyo Nishide, Ikuo Uchiyama

MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. The projects contributing to this resource are: Mouse Genome Database (MGD) Project, Gene Expression Database (GXD) Project, Mouse Tumor Biology (MTB) Database Project, Gene Ontology (GO) Project at MGI, and MouseCyc Project at MGI.

The NGSOnto ontology aims at capturing the workflow of all the processes involved , in order to ensure the reproducibility of the entire process, through the use of a controled and specific vocabulary.

ParameciumDB is a new model organism database associated with the genome sequencing project. Built with core components of the Generic Model Organism Database (GMOD) project, ParameciumDB currently contains the macronuclear genome sequence and annotations, linked to available genetic data (RNA interference data and stock collection).

This database contains all S. pombe (fission yeast) known and predicted protein coding genes, pseudogenes, transposons, tRNAs, rRNAs, snRNAs, snoRNAs and other known and predicted non-coding RNAs. Curation of new and existing literature is ongoing and changes are incorporated weekly. User feedback is welcome. Please send updates, comments and corrections to help us improve the resource using the feedback forms on each gene page.

SGD(TM) is a scientific database of the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast.

The Arabidopsis Information Resource (TAIR) collects information and maintains a database of genetic and molecular biology data for Arabidopsis thaliana, a widely used model plant.

wFleaBase is a repository of data and an electronic information service provided for the Daphnia Genomics Consortium (DGC) and the general scientific community.

WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and some related nematodes. Founded in 2000, the WormBase Consortium is led by Paul Sternberg of CalTech, Richard Durbin of the Wellcome Trust Sanger Institute, Lincoln Stein of Cold Spring Harbor, and John Spieth of the Washington University Genome Sequencing Center.