GBOL

Last uploaded: August 9, 2019
Preferred Name

SequenceAssembly

Synonyms
Definitions

An assembly of a sequence based on other sequences. An assembly is defined by list of parts that can either be included sequences or gaps. If a sequence is include a region of the included sequence must be specified. If a gap is include a known or estimated gap length must be specified, if unknown the gap length defaults to 100. The sequence at the gaps is equal to N. The provenance of the assembly process can be included. SequenceFeatureCore #* Sorted list of parts that upon concatenation forms the complete sequence. sequencePart @:SequencePart+=; #* The provenance of the feature provenance @:Provenance?;

ID

http://gbol.life/0.1/SequenceAssembly

comment

An assembly is defined by list of parts that can either be included sequences or gaps. If a sequence is include a region of the included sequence must be specified. If a gap is include a known or estimated gap length must be specified, if unknown the gap length defaults to 100. The sequence at the gaps is equal to N. The provenance of the assembly process can be included.

SequenceFeatureCore

#* Sorted list of parts that upon concatenation forms the complete sequence. sequencePart @:SequencePart+=; #* The provenance of the feature provenance @:Provenance?;

definition

An assembly of a sequence based on other sequences.

An assembly is defined by list of parts that can either be included sequences or gaps. If a sequence is include a region of the included sequence must be specified. If a gap is include a known or estimated gap length must be specified, if unknown the gap length defaults to 100. The sequence at the gaps is equal to N. The provenance of the assembly process can be included.

SequenceFeatureCore

#* Sorted list of parts that upon concatenation forms the complete sequence. sequencePart @:SequencePart+=; #* The provenance of the feature provenance @:Provenance?;

prefixIRI

SequenceAssembly

prefLabel

SequenceAssembly

propertyDefinitions

#* Sorted list of parts that upon concatenation forms the complete sequence. sequencePart @:SequencePart+=; #* The provenance of the feature provenance @:Provenance?;

subDomain

SequenceFeatureCore

subClassOf

http://www.w3.org/2002/07/owl#Thing

Delete Subject Author Type Created
No notes to display
Create mapping

Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/SO_0000353 SO LOOM
http://semanticscience.org/resource/sequence-assembly MATERIALSMINE LOOM
http://semanticscience.org/resource/SIO_000989 SIO LOOM
http://purl.obolibrary.org/obo/SO_0000353 HOIP LOOM
http://purl.obolibrary.org/obo/SO_0000353 PDRO LOOM
http://purl.obolibrary.org/obo/SO_0000353 EUPATH LOOM
http://purl.obolibrary.org/obo/SO_0000353 OBI LOOM
http://purl.obolibrary.org/obo/SO_0000353 NGBO LOOM
http://purl.obolibrary.org/obo/SO_0000353 OBCS LOOM
http://purl.obolibrary.org/obo/SO_0000353 ONE LOOM
http://purl.obolibrary.org/obo/SO_0000353 EGO LOOM
http://purl.obolibrary.org/obo/SO_0000353 OBI_IEE LOOM
http://purl.obolibrary.org/obo/SO_0000353 NIFSTD LOOM
http://purl.obolibrary.org/obo/SO_0000353 GENEPIO LOOM
http://edamontology.org/topic_0196 BERO LOOM
http://edamontology.org/topic_0196 EDAM LOOM
http://edamontology.org/topic_0196 ITO LOOM
http://edamontology.org/topic_0196 BMT LOOM
http://semanticscience.org/resource/SIO_000989 HHEARP LOOM
http://semanticscience.org/resource/SIO_000989 CHEAR LOOM
http://semanticscience.org/resource/SIO_000989 BIOMO LOOM
http://semanticscience.org/resource/SIO_000989 SCO LOOM
http://semanticscience.org/resource/SIO_000989 HHEAR LOOM
http://semanticscience.org/resource/SIO_000989 HASCO LOOM
http://edamontology.org/data_0925 EDAM LOOM
http://edamontology.org/data_0925 ITO LOOM
http://edamontology.org/operation_0310 NGSONTO LOOM
http://edamontology.org/operation_0310 EDAM LOOM
http://edamontology.org/operation_0310 ITO LOOM