Suggested Ontology for Pharmacogenomics

Last uploaded: March 2, 2017
Details
Acronym SOPHARM
Visibility Public
Description SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.
Status Beta
Format OWL
Contact Adrien Coulet, adrien.coulet@loria.fr
Categories Genomic and Proteomic
Submissions
Version Released Uploaded Downloads
Version: SO-Pharm 2.2 Release: 02 Mar 2017 (Parsed, Indexed, Metrics, Annotator, Error Diff) 03/02/2017 03/02/2017 OWL | CSV | RDF/XML
Author: Adrien CouletVersion: SO-Pharm 2.0 (alpha version)Release: 09/19/2007Contact: adrien dot coulet at loria dot frUniversity of Nancy (Archived) 03/01/2017 03/01/2017 OWL | Diff
Author: Adrien CouletVersion: SO-Pharm 2.0 (alpha version)Release: 09/19/2007Contact: adrien dot coulet at loria dot frUniversity of Nancy (Archived) 02/28/2017 02/28/2017 OWL | Diff
Author: Adrien CouletVersion: SO-Pharm 2.0 (alpha version)Release: 09/19/2007Contact: adrien dot coulet at loria dot frUniversity of Nancy (Archived) 02/24/2017 02/24/2017 OWL | Diff
Author: Adrien Coulet Version: SO-Pharm 2.0 (alpha version) Release: 09/19/2007 Contact: adrien dot coulet at loria dot fr University of Nancy (Archived) 02/23/2017 02/23/2017 OWL | Diff
Author: Adrien Coulet Version: SO-Pharm 2.0 (alpha version) Release: 09/19/2007 Contact: adrien dot coulet at loria dot fr University of Nancy (Archived) 01/26/2017 01/26/2017 OWL | Diff
Author: Adrien Coulet Version: SO-Pharm 2.0 (alpha version) Release: 09/19/2007 Contact: adrien dot coulet at loria dot fr University of Nancy (Archived) 01/11/2017 01/11/2017 OWL | Diff
Author: Adrien Coulet Version: SO-Pharm 2.0 (alpha version) Release: 09/19/2007 Contact: adrien dot coulet at loria dot fr University of Nancy (Archived) 10/06/2016 10/06/2016 OWL | Diff
Author: Adrien Coulet Version: SO-Pharm 2.0 (alpha version) Release: 09/19/2007 Contact: adrien dot coulet at loria dot fr University of Nancy (Archived) 08/20/2015 08/20/2015 OWL | Diff
Author: Adrien CouletVersion: SO-Pharm 2.1Release: 01/15/2009Contact: adrien dot coulet at loria dot frUniversity of Nancy (Archived) 08/20/2015 02/06/2009 OWL | Diff
2.1.2 (Archived) 01/21/2009 01/21/2009 OWL
2.1 (Archived) 11/26/2008 11/26/2008 OWL
2.0 alpha (Archived) 08/21/2007 08/22/2007 OWL
more...
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Metrics
Classes 117
Individuals 17
Properties 61
Maximum depth 4
Maximum number of children 51
Average number of children 2
Classes with a single child 26
Classes with more than 25 children 1
Classes with no definition 47
Visits
Projects using SOPHARM

PractiKPharma