Phenotypic Quality Ontology

Last uploaded: November 11, 2024
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Preferred Name

brainstem
Synonyms

accessory medullary lamina of pallidum

brain stem
Definitions

Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]. 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions).
ID

http://purl.obolibrary.org/obo/UBERON_0002298
comment

'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions).
continuous with

http://purl.obolibrary.org/obo/UBERON_0002240
contributes to morphology of

http://purl.obolibrary.org/obo/UBERON_0000955
database_cross_reference

EMAPA:32678

BTO:0000146

SCTID:180925009

CALOHA:TS-0093

TAO:0002156

VHOG:0001457

NCIT:C12441

Wikipedia:Brainstem

BIRNLEX:1565

ZFA:0001707

MESH:D001933

EFO:0001962

BAMS:BS

EV:0100241

FMA:79876

MA:0000169

MBA:343
definition

Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized].
has part

http://purl.obolibrary.org/obo/UBERON_0001896

http://purl.obolibrary.org/obo/UBERON_0001943
has_exact_synonym

brain stem
has_obo_namespace

uberon
has_related_synonym

accessory medullary lamina of pallidum
id

UBERON:0002298
in_subset

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#uberon_slim
label

brainstem
notation

UBERON:0002298
overlaps

http://purl.obolibrary.org/obo/UBERON_0001896

http://purl.obolibrary.org/obo/UBERON_0001943

http://purl.obolibrary.org/obo/UBERON_0000955
prefLabel

brainstem
subClassOf

http://purl.obolibrary.org/obo/UBERON_0002616
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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0002298 CL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NPOKB SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 UBERON SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 CLO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OVAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OHPI SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 GCBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 CCONT SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 FOVT SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OCMR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 HOIP SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 RBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 XPO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 DOID SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 PCL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 MONDO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NIFDYS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 EPIO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 BERO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 HHEAR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 DDSS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 ODAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 HRA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 UPHENO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OCVDAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 ECAO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 KTAO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 MAXO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 FNS-H SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 AISM SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NMDCO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 CL LOOM
http://neuromorpho.org/ontologies/vertebrateH.owl#NMOBr_176 NMOBR LOOM
https://explaination.net/onto/tree-structure-brain-anatomy-FastSurfer#Brainstem BRAIN-COF LOOM
http://purl.obolibrary.org/obo/VHOG_0001457 VHOG LOOM
http://www.semanticweb.org/rjyy/ontologies/2015/5/ESSO#Brain_Stem ESSO LOOM
http://www.semanticweb.org/rjyy/ontologies/2015/5/ESSO#Brain_Stem MEPO LOOM
http://purl.bioontology.org/ontology/LNC/LP207337-9 LOINC LOOM
http://www.semanticweb.org/ontologies/2009/3/ontoDPN.owl#OPPIO_a000307 EPO LOOM
http://scai.fraunhofer.de/AlzheimerOntology#brainstem NIO LOOM
http://purl.obolibrary.org/obo/EMAPA_32678 EMAPA LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Brain_Stem APANEUROCLUSTER LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Brain_Stem APAONTO LOOM
http://www.radlex.org/RID/RID6677 RADLEX LOOM
http://uri.interlex.org/fsl/uris/atlases/HarvardOxford-Subcortical/labels/7 NIFSTD LOOM
http://api.brain-map.org/api/v2/data/Structure/343 NPOKB LOOM
http://api.brain-map.org/api/v2/data/Structure/343 NIFSTD LOOM
http://www.semanticweb.org/ontologies/STO.owl#b50fc8_8c7a_43cd_8dfc_e287c4b7c010 STO-DRAFT LOOM
http://www.semanticweb.org/ontologies/STO.owl#b50fc8_8c7a_43cd_8dfc_e287c4b7c010 CVAO LOOM
http://purl.bioontology.org/ontology/RCD/7N005 RCD LOOM
http://www.owl-ontologies.com/OntologyXCT.owl#Brainstem CTX LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0006121 OCHV LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D001933 RH-MESH LOOM
http://purl.obolibrary.org/obo/MA_0000169 MA LOOM
http://purl.org/obo/owlapi/fma#FMA_79876 BIOMODELS LOOM
http://www.projecthalo.com/aura#Brainstem AURA LOOM
http://purl.obolibrary.org/obo/BTO_0000146 DTO LOOM
http://purl.obolibrary.org/obo/BTO_0000146 BTO LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#2142 OCHV LOOM
http://purl.org/sig/ont/fma/fma79876 FMA LOOM
http://purl.org/sig/ont/fma/fma79876 ROO LOOM
http://purl.bioontology.org/ontology/SNMI/T-A2050 SNMI LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NPOKB LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OAE LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 UBERON LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 CLO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OVAE LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OHPI LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 GCBO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 CCONT LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 FOVT LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OCMR LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 HOIP LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 RBO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 XPO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 DOID LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 PCL LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NIFDYS LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 EPIO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 GO-PLUS LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NBO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 HHEAR LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 DDSS LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 ODAE LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 HRA LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 UPHENO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OCVDAE LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 ECAO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 KTAO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 MAXO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 FNS-H LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 AISM LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NMDCO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OBA LOOM
http://purl.bioontology.org/ontology/CSP/0476-5401 CRISP LOOM
http://www.co-ode.org/ontologies/galen#Brainstem GALEN LOOM
http://www.purl.org/NDDO/NDDO_20001006 NDDO LOOM
http://purl.obolibrary.org/obo/FMA_79876 NIO LOOM
urn:absolute:RadiationOncologyStructuresOntology#Brainstem ROS LOOM
http://www.semanticweb.org/ontologies/2012/11/abnormalities.owl#phenodb:1813 IFAR LOOM
http://www.ustb.edu.cn/thesauri/tocr/v1/data#C571346494750191618 ACVD_ONTOLOGY LOOM
http://purl.obolibrary.org/obo/ZFA_0001707 ZFA LOOM
http://purl.obolibrary.org/obo/ZFA_0001707 ZP LOOM
http://purl.jp/bio/4/id/200906076160033323 IOBC LOOM
http://regenbase.org/ontology#RB_0000505 RB LOOM
http://purl.obolibrary.org/obo/NCIT_C12441 BERO LOOM
http://scai.fraunhofer.de/MSOntology#Brainstem MSO LOOM
http://purl.obolibrary.org/obo/TAO_0002156 TAO LOOM
http://mouse.brain-map.org/atlas/index.html#BS ABA-AMB LOOM
http://www.ifomis.org/acgt/1.0#Brainstem ACGT-MO LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_1565 BIRNLEX LOOM
http://purl.obolibrary.org/obo/OMIT_0003289 OMIT LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_1565 NIFSTD LOOM
http://www.semanticweb.org/ontologies/2009/9/Ontology1255357986125.owl#Brainstem BRCT LOOM
http://radlex.org/RID/RID6677 RADLEX LOOM
http://localhost/plosthes.2017-1#1507 PLOSTHES LOOM
http://uri.interlex.org/waxholm/uris/sd/labels/47 NIFSTD LOOM
http://doe-generated-ontology.com/OntoAD#C0006121 ONTOAD LOOM
http://purl.bioontology.org/ontology/MESH/D001933 MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#A08.186.211.132 RH-MESH LOOM
http://id.nlm.nih.gov/mesh/D001933 MDM LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12441 NCIT LOOM