Human Interaction Network Ontology

Last uploaded: June 27, 2014
Preferred Name

Apoptosis
Synonyms
Definitions

Authored: Alnemri, E, Hengartner, M, Tschopp, J, Tsujimoto, Y, Hardwick, JM, 2004-01-16 16:01:51 Apoptosis is a distinct form of cell death that is functionally and morphologically different from necrosis. Nuclear chromatin condensation, cytoplasmic shrinking, dilated endoplasmic reticulum, and membrane blebbing characterize apoptosis in general. Mitochondria remain morphologically unchanged. In 1972 Kerr et al introduced the concept of apoptosis as a distinct form of "cell-death", and the mechanisms of various apoptotic pathways are still being revealed today. <BR>The two principal pathways of apoptosis are (1) the Bcl-2 inhibitable or intrinsic pathway induced by various forms of stress like intracellular damage, developmental cues, and external stimuli and (2) the caspase 8/10 dependent or extrinsic pathway initiated by the engagement of death receptors<BR> The caspase 8/10 dependent or extrinsic pathway is a death receptor mediated mechanism that results in the activation of caspase-8 and caspase-10. Activation of death receptors like Fas/CD95, TNFR1, and the TRAIL receptor is promoted by the TNF family of ligands including FASL (APO1L OR CD95L), TNF, LT-alpha, LT-beta, CD40L, LIGHT, RANKL, BLYS/BAFF, and APO2L/TRAIL. These ligands are released in response to microbial infection, or as part of the cellular, humoral immunity responses during the formation of lymphoid organs, activation of dendritic cells, stimulation or survival of T, B, and natural killer (NK) cells, cytotoxic response to viral infection or oncogenic transformation. <BR> The Bcl-2 inhibitable or intrinsic pathway of apoptosis is a stress-inducible process, and acts through the activation of caspase-9 via Apaf-1 and cytochrome c. The rupture of the mitochondrial membrane, a rapid process involving some of the Bcl-2 family proteins, releases these molecules into the cytoplasm. Examples of cellular processes that may induce the intrinsic pathway in response to various damage signals include: auto reactivity in lymphocytes, cytokine deprivation, calcium flux or cellular damage by cytotoxic drugs like taxol, deprivation of nutrients like glucose and growth factors like EGF, anoikis, transactivation of target genes by tumor suppressors including p53.<BR> In many non-immune cells, death signals initiated by the extrinsic pathway are amplified by connections to the intrinsic pathway. The connecting link appears to be the truncated BID (tBID) protein a proteolytic cleavage product mediated by caspase-8 or other enzymes. Edited: Gopinathrao, G, Matthews, L, Gillespie, ME, Joshi-Tope, G, 0000-00-00 00:00:00 Reviewed: Hengartner, M, Ranganathan, S, Vaux, D, 0000-00-00 00:00:00

ID

http://purl.obolibrary.org/obo/HINO_0016253

comment

Authored: Alnemri, E, Hengartner, M, Tschopp, J, Tsujimoto, Y, Hardwick, JM, 2004-01-16 16:01:51

Apoptosis is a distinct form of cell death that is functionally and morphologically different from necrosis. Nuclear chromatin condensation, cytoplasmic shrinking, dilated endoplasmic reticulum, and membrane blebbing characterize apoptosis in general. Mitochondria remain morphologically unchanged. In 1972 Kerr et al introduced the concept of apoptosis as a distinct form of "cell-death", and the mechanisms of various apoptotic pathways are still being revealed today.
The two principal pathways of apoptosis are (1) the Bcl-2 inhibitable or intrinsic pathway induced by various forms of stress like intracellular damage, developmental cues, and external stimuli and (2) the caspase 8/10 dependent or extrinsic pathway initiated by the engagement of death receptors
The caspase 8/10 dependent or extrinsic pathway is a death receptor mediated mechanism that results in the activation of caspase-8 and caspase-10. Activation of death receptors like Fas/CD95, TNFR1, and the TRAIL receptor is promoted by the TNF family of ligands including FASL (APO1L OR CD95L), TNF, LT-alpha, LT-beta, CD40L, LIGHT, RANKL, BLYS/BAFF, and APO2L/TRAIL. These ligands are released in response to microbial infection, or as part of the cellular, humoral immunity responses during the formation of lymphoid organs, activation of dendritic cells, stimulation or survival of T, B, and natural killer (NK) cells, cytotoxic response to viral infection or oncogenic transformation.
The Bcl-2 inhibitable or intrinsic pathway of apoptosis is a stress-inducible process, and acts through the activation of caspase-9 via Apaf-1 and cytochrome c. The rupture of the mitochondrial membrane, a rapid process involving some of the Bcl-2 family proteins, releases these molecules into the cytoplasm. Examples of cellular processes that may induce the intrinsic pathway in response to various damage signals include: auto reactivity in lymphocytes, cytokine deprivation, calcium flux or cellular damage by cytotoxic drugs like taxol, deprivation of nutrients like glucose and growth factors like EGF, anoikis, transactivation of target genes by tumor suppressors including p53.
In many non-immune cells, death signals initiated by the extrinsic pathway are amplified by connections to the intrinsic pathway. The connecting link appears to be the truncated BID (tBID) protein a proteolytic cleavage product mediated by caspase-8 or other enzymes.

Edited: Gopinathrao, G, Matthews, L, Gillespie, ME, Joshi-Tope, G, 0000-00-00 00:00:00

Reviewed: Hengartner, M, Ranganathan, S, Vaux, D, 0000-00-00 00:00:00

definition source

Reactome, http://www.reactome.org

Pubmed14634621

Pubmed4561027

Pubmed12209154

Pubmed12189384

Pubmed14561771

Pubmed12505355

Pubmed15218528

label

Apoptosis

located_in

http://purl.obolibrary.org/obo/NCBITaxon_9606

prefixIRI

HINO:0016253

prefLabel

Apoptosis

seeAlso

Reactome Database ID Release 43109581

GENE ONTOLOGYGO:0006915

ReactomeREACT_578

subClassOf

http://purl.obolibrary.org/obo/INO_0000021

has_part

http://purl.obolibrary.org/obo/HINO_0016260

http://purl.obolibrary.org/obo/HINO_0016239

http://purl.obolibrary.org/obo/HINO_0016214

http://purl.obolibrary.org/obo/HINO_0016222

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http://scai.fraunhofer.de/HuPSON#SCAIVPH_00000304 HUPSON LOOM
http://purl.org/obo/owl/GO#GO_0006915 NPO LOOM
http://purl.org/obo/owl/GO#GO_0006915 BIOMODELS LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/20663007 SNOMEDCT LOOM
http://localhost/plosthes.2017-1#5488 PLOSTHES LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D017209 RH-MESH LOOM
http://scai.fraunhofer.de/CSEO#CSEO_00000992 CSEO LOOM
http://cbo.biocomplexity.indiana.edu/svn/cbo/trunk/CBO_1_1_2.owl#Apoptosis CBO LOOM
http://purl.bioontology.org/ontology/MESH/D017209 MESH LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Apoptosis APAONTO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17557 NCIT LOOM
http://www.co-ode.org/ontologies/galen#Apoptosis GALEN LOOM
http://www.semanticweb.org/ontologies/2008/8/MultiscaleSkinPhysiologyOntology.owl#Apoptosis SPO LOOM
http://www.stanford.edu/~coulet/phare.owl#Apoptosis PHARE LOOM
http://purl.obolibrary.org/obo/OMIT_0017600 OMIT LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G04.299.139.160 RH-MESH LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#17920 OCHV LOOM
http://scai.fraunhofer.de/CSEO#CSEO_00000043 CSEO LOOM
http://purl.jp/bio/4/id/200906039143928462 IOBC LOOM
http://purl.obolibrary.org/obo/MPATH_3 MPATH LOOM
http://purl.obolibrary.org/obo/MPATH_3 BMONT LOOM
http://www.projecthalo.com/aura#Apoptosis AURA LOOM
urn:agi-pathway:uuid-be878e67-d551-45ea-a23d-6170599173a9 BPT LOOM
http://purl.bioontology.org/ontology/CSP/4001-0010 CRISP LOOM
http://www.semanticweb.org/ontologies/STO.owl#OWLClass_fa2ff13e_2ae6_45aa_8d84_dd2441fbb074 STO-DRAFT LOOM
http://www.semanticweb.org/ontologies/STO.owl#OWLClass_fa2ff13e_2ae6_45aa_8d84_dd2441fbb074 CVAO LOOM
http://www.semanticweb.org/ADMO#apoptosis ADMO LOOM
http://www.pepathway.org/peo/1.2#Apoptosis PE-O LOOM
http://purl.obolibrary.org/obo/MESH_D017209 BERO LOOM
http://purl.obolibrary.org/obo/APO_0000155 APO LOOM
http://purl.obolibrary.org/obo/APO_0000155 UPHENO LOOM
http://doe-generated-ontology.com/OntoAD#C0162638 ONTOAD LOOM
http://purl.bioontology.org/ontology/SNMI/M-54250 SNMI LOOM
http://purl.obolibrary.org/obo/NCIT_C17557 BERO LOOM
http://www.ustb.edu.cn/thesauri/tocr/v1/data#C571345044435366089 ACVD_ONTOLOGY LOOM
http://regenbase.org/ontology#RB_0000040 RB LOOM
http://purl.bioontology.org/ontology/MEDDRA/10059512 MEDDRA LOOM
http://scai.fraunhofer.de/PWDICT#ID1019 PTS LOOM
http://purl.obolibrary.org/obo/GO_0006915 NIGO LOOM
http://purl.obolibrary.org/obo/GO_0006915 GO-EXT LOOM