Human Interaction Network Ontology

Last uploaded: June 27, 2014
Preferred Name

Gluconeogenesis
Synonyms
Definitions

The reactions of gluconeogenesis convert mitochondrial pyruvate to cytosolic glucose 6-phosphate which in turn can be hydrolyzed to glucose and exported from the cell. Gluconeogenesis is confined to cells of the liver and kidney and enables glucose synthesis from molecules such as lactate and alanine and other amino acids when exogenous glucose is not available (reviewed, e.g., by Gerich 1993). The process of gluconeogenesis as diagrammed below occurs in two parts: a network of reactions converts mitochondrial pyruvate to cytosolic phosphoenolpyruvate; then phosphoenolpyruvate is converted to glucose 6-phosphate in a single sequence of cytosolic reactions.<p>Three variants of the first part of the process are physiologically important. 1) A series of transport and transamination reactions convert mitochondrial oxaloacetate to cytosolic oxaloacetate which is converted to phosphoenolpyruvate by a hormonally regulated, cytosolic isoform of phosphoenolpyruvate carboxykinase. This variant allows regulated glucose synthesis from lactate. 2) Mitochondrial oxaloacetate is reduced to malate, which is exported to the cytosol and re-oxidized to oxaloacetate. This variant provides reducing equivalents to the cytosol, needed for glucose synthesis from amino acids such as alanine and glutamine. 3) Constitutively expressed mitochondrial phosphoenolpyruvate carboxykinase catalyzes the conversion of mitochondrial oxaloacetate to phosphoenolpyruvate which is then transported to the cytosol. The exact path followed by any one molecule of pyruvate through this reaction network is determined by the tissue in which the reactions are occurring, the source of the pyruvate, and the physiological stress that triggered gluconeogenesis.<p>In all cases, the synthesis of glucose from two molecules of pyruvate requires the generation and consumption of two reducing equivalents as cytosolic NADH + H+. For pyruvate derived from lactate (variants 1 and 3), NADH + H+ is generated with the oxidation of lactate to pyruvate in the cytosol (a reaction of pyruvate metabolism not shown in the diagram). For pyruvate derived from amino acids (variant 2), mitochondrial NADH + H+ generated by glutamate dehydrogenase (a reaction of amino acid metabolism, not shown) is used to reduce oxaloacetate to malate, which is transported to the cytosol and re-oxidized, generating cytosolic NADH + H+. The synthesis of glucose from pyruvate also requires the consumption of six high-energy phosphates, four from ATP and two from GTP.<p>In the second part of gluconeogenesis, cytosolic phosphoenolpyruvate, however derived, is converted to fructose 1,6-bisphosphate by reactions that are the reverse of steps of glycolysis. Hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate is catalyzed by fructose 1,6-bisphosphatase, and fructose 6-phosphate is reversibly isomerized to glucose 6-phosphate. Reviewed: Harris, RA, 2008-09-10 18:47:12 Edited: D'Eustachio, P, 0000-00-00 00:00:00

ID

http://purl.obolibrary.org/obo/HINO_0015270

comment

The reactions of gluconeogenesis convert mitochondrial pyruvate to cytosolic glucose 6-phosphate which in turn can be hydrolyzed to glucose and exported from the cell. Gluconeogenesis is confined to cells of the liver and kidney and enables glucose synthesis from molecules such as lactate and alanine and other amino acids when exogenous glucose is not available (reviewed, e.g., by Gerich 1993). The process of gluconeogenesis as diagrammed below occurs in two parts: a network of reactions converts mitochondrial pyruvate to cytosolic phosphoenolpyruvate; then phosphoenolpyruvate is converted to glucose 6-phosphate in a single sequence of cytosolic reactions.

Three variants of the first part of the process are physiologically important. 1) A series of transport and transamination reactions convert mitochondrial oxaloacetate to cytosolic oxaloacetate which is converted to phosphoenolpyruvate by a hormonally regulated, cytosolic isoform of phosphoenolpyruvate carboxykinase. This variant allows regulated glucose synthesis from lactate. 2) Mitochondrial oxaloacetate is reduced to malate, which is exported to the cytosol and re-oxidized to oxaloacetate. This variant provides reducing equivalents to the cytosol, needed for glucose synthesis from amino acids such as alanine and glutamine. 3) Constitutively expressed mitochondrial phosphoenolpyruvate carboxykinase catalyzes the conversion of mitochondrial oxaloacetate to phosphoenolpyruvate which is then transported to the cytosol. The exact path followed by any one molecule of pyruvate through this reaction network is determined by the tissue in which the reactions are occurring, the source of the pyruvate, and the physiological stress that triggered gluconeogenesis.

In all cases, the synthesis of glucose from two molecules of pyruvate requires the generation and consumption of two reducing equivalents as cytosolic NADH + H+. For pyruvate derived from lactate (variants 1 and 3), NADH + H+ is generated with the oxidation of lactate to pyruvate in the cytosol (a reaction of pyruvate metabolism not shown in the diagram). For pyruvate derived from amino acids (variant 2), mitochondrial NADH + H+ generated by glutamate dehydrogenase (a reaction of amino acid metabolism, not shown) is used to reduce oxaloacetate to malate, which is transported to the cytosol and re-oxidized, generating cytosolic NADH + H+. The synthesis of glucose from pyruvate also requires the consumption of six high-energy phosphates, four from ATP and two from GTP.

In the second part of gluconeogenesis, cytosolic phosphoenolpyruvate, however derived, is converted to fructose 1,6-bisphosphate by reactions that are the reverse of steps of glycolysis. Hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate is catalyzed by fructose 1,6-bisphosphatase, and fructose 6-phosphate is reversibly isomerized to glucose 6-phosphate.

Reviewed: Harris, RA, 2008-09-10 18:47:12

Edited: D'Eustachio, P, 0000-00-00 00:00:00

definition source

Reactome, http://www.reactome.org

Pubmed8379904

label

Gluconeogenesis

located_in

http://purl.obolibrary.org/obo/NCBITaxon_9606

prefixIRI

HINO:0015270

prefLabel

Gluconeogenesis

seeAlso

ReactomeREACT_1520

Reactome Database ID Release 4370263

GENE ONTOLOGYGO:0006094

subClassOf

http://purl.obolibrary.org/obo/INO_0000021

has_part

http://purl.obolibrary.org/obo/HINO_0019370

http://purl.obolibrary.org/obo/HINO_0019376

http://purl.obolibrary.org/obo/HINO_0019372

http://purl.obolibrary.org/obo/HINO_0019375

http://purl.obolibrary.org/obo/HINO_0019377

http://purl.obolibrary.org/obo/HINO_0019374

http://purl.obolibrary.org/obo/HINO_0019625

http://purl.obolibrary.org/obo/HINO_0019629

http://purl.obolibrary.org/obo/HINO_0019622

http://purl.obolibrary.org/obo/HINO_0019623

http://purl.obolibrary.org/obo/HINO_0019626

http://purl.obolibrary.org/obo/HINO_0019628

http://purl.obolibrary.org/obo/HINO_0019630

http://purl.obolibrary.org/obo/HINO_0019631

http://purl.obolibrary.org/obo/HINO_0019368

http://purl.obolibrary.org/obo/HINO_0019367

http://purl.obolibrary.org/obo/HINO_0019354

http://purl.obolibrary.org/obo/HINO_0019355

http://purl.obolibrary.org/obo/HINO_0019340

http://purl.obolibrary.org/obo/HINO_0019339

http://purl.obolibrary.org/obo/HINO_0019438

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http://purl.obolibrary.org/obo/OMIT_0007133 OMIT LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0017715 OCHV LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G03.495.256.500 RH-MESH LOOM
http://purl.bioontology.org/ontology/CSP/1439-4707 CRISP LOOM
http://id.nlm.nih.gov/mesh/D005943 MDM LOOM
http://purl.bioontology.org/ontology/MESH/D005943 MESH LOOM
http://purl.obolibrary.org/obo/GO_0006094 CL LOOM
http://purl.obolibrary.org/obo/GO_0006094 EFO LOOM
http://purl.obolibrary.org/obo/GO_0006094 RBO LOOM
http://purl.obolibrary.org/obo/GO_0006094 GO-EXT LOOM
http://purl.obolibrary.org/obo/GO_0006094 UBERON LOOM
http://purl.obolibrary.org/obo/GO_0006094 FOVT LOOM
http://purl.obolibrary.org/obo/GO_0006094 HOIP LOOM
http://purl.obolibrary.org/obo/GO_0006094 XPO LOOM
http://purl.obolibrary.org/obo/GO_0006094 PHAGE LOOM
http://purl.obolibrary.org/obo/GO_0006094 PCL LOOM
http://purl.obolibrary.org/obo/GO_0006094 NIFDYS LOOM
http://purl.obolibrary.org/obo/GO_0006094 BERO LOOM
http://purl.obolibrary.org/obo/GO_0006094 HHEAR LOOM
http://purl.obolibrary.org/obo/GO_0006094 TXPO LOOM
http://purl.obolibrary.org/obo/GO_0006094 GO LOOM
http://purl.obolibrary.org/obo/GO_0006094 UPHENO LOOM
http://purl.obolibrary.org/obo/GO_0006094 FTC LOOM
http://purl.obolibrary.org/obo/GO_0006094 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0006094 ECAO LOOM
http://purl.obolibrary.org/obo/GO_0006094 REGN_GO LOOM
http://purl.obolibrary.org/obo/GO_0006094 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0006094 ZP LOOM
http://purl.obolibrary.org/obo/GO_0006094 AISM LOOM
http://purl.obolibrary.org/obo/GO_0006094 NMDCO LOOM
http://purl.obolibrary.org/obo/GO_0006094 OBA LOOM
http://www.phoc.org.cn/pmo/class/PMO_00061510 PMAPP-PMO LOOM
http://purl.org/obo/owl/GO#GO_0006094 BIOMODELS LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.149.115.160.500 RH-MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.111.087.160.500 RH-MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D005943 RH-MESH LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#5559 OCHV LOOM
http://purl.obolibrary.org/obo/MESH_D005943 BERO LOOM
http://www.co-ode.org/ontologies/galen#Gluconeogenesis GALEN LOOM
http://purl.jp/bio/4/id/200906020786070918 IOBC LOOM
http://purl.obolibrary.org/obo/UPa_UPA00138 UPA LOOM