Genomic Feature and Variation Ontology

Last uploaded: October 14, 2016
Preferred Name

Chromosome

Synonyms
Definitions

A chromosome can be used as an abstract representation of a (not necessarily named) chromosome to represent ploidy within a data set. The "Chromosome" instance is then used for for denoting the locus of phased genotypes. For placing genomic features ("Feature" class instances) on a chromosome, contig, scaffold, etc., please see the "Landmark" class. It is encouraged that Sequence Ontology terms are used to annotate a Landmark with a biological type (s.a. "chromosome", "contig", etc.). Encodes for "sequencing-scope" pragma in GVF.

ID

https://www.codamono.com/biointerchange/gfvo#Chromosome

comment

A chromosome can be used as an abstract representation of a (not necessarily named) chromosome to represent ploidy within a data set. The "Chromosome" instance is then used for for denoting the locus of phased genotypes. For placing genomic features ("Feature" class instances) on a chromosome, contig, scaffold, etc., please see the "Landmark" class. It is encouraged that Sequence Ontology terms are used to annotate a Landmark with a biological type (s.a. "chromosome", "contig", etc.). Encodes for "sequencing-scope" pragma in GVF.

isDefinedBy

http://sequenceontology.org/resources/gvf.html

label

Chromosome

prefixIRI

Chromosome

prefLabel

Chromosome

seeAlso

http://en.wikipedia.org/wiki/Chromosome

subClassOf

https://www.codamono.com/biointerchange/gfvo#ChemicalEntity

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/GO_0005694 GCBO LOOM
http://purl.obolibrary.org/obo/GO_0005694 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0005694 GCBO LOOM
http://purl.obolibrary.org/obo/SO_0000340 DOID LOOM
http://semanticscience.org/resource/chromosome MATERIALSMINE LOOM
http://purl.obolibrary.org/obo/SO_0000340 SO LOOM
http://semanticscience.org/resource/SIO_000899 SIO LOOM
http://purl.obolibrary.org/obo/GO_0005694 UBERON LOOM
http://purl.obolibrary.org/obo/GO_0005694 PATO LOOM
http://purl.obolibrary.org/obo/GO_0005694 OBA LOOM
http://purl.obolibrary.org/obo/SO_0000340 DOID LOOM
http://purl.obolibrary.org/obo/SO_0000340 OBA LOOM
http://purl.obolibrary.org/obo/GO_0005694 CL LOOM
http://purl.obolibrary.org/obo/GO_0005694 HOIP LOOM
http://purl.obolibrary.org/obo/GO_0005694 XPO LOOM
http://purl.obolibrary.org/obo/GO_0005694 FYPO LOOM
http://purl.obolibrary.org/obo/GO_0005694 GO LOOM
http://purl.obolibrary.org/obo/GO_0005694 ZP LOOM
http://purl.obolibrary.org/obo/SO_0000340 FYPO LOOM
http://semanticscience.org/resource/SIO_000899 HHEARP LOOM
http://semanticscience.org/resource/SIO_000899 CHEAR LOOM
http://semanticscience.org/resource/SIO_000899 BIOMO LOOM
http://semanticscience.org/resource/SIO_000899 SCO LOOM
http://semanticscience.org/resource/SIO_000899 HHEAR LOOM
http://semanticscience.org/resource/SIO_000899 HASCO LOOM
http://purl.bioontology.org/ontology/RCD/Xa0dt RCD LOOM
http://purl.bioontology.org/ontology/LNC/MTHU047638 LOINC LOOM
http://purl.obolibrary.org/obo/PLANA_0002021 PLANA LOOM
http://purl.obolibrary.org/obo/PLANA_0002021 PLANP LOOM
http://purl.jp/bio/4/id/200906036843162267 IOBC LOOM
http://www.co-ode.org/ontologies/galen#Chromosome GALEN LOOM
http://gbol.life/0.1/Chromosome GBOL LOOM
http://www.projecthalo.com/aura#Chromosome AURA LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0008633 OCHV LOOM
http://www.bootstrep.eu/ontology/GRO#Chromosome GRO LOOM
http://www.ifomis.org/acgt/1.0#Chromosome ACGT-MO LOOM
http://purl.org/biotop/biotop.owl#Chromosome BT LOOM
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#chromosome SOPHARM LOOM
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#chromosome SNPO LOOM
urn:agi-folder:chromosome BPT LOOM
http://purl.bioontology.org/ontology/LNC/LP32750-9 LOINC LOOM
http://www.phoc.org.cn/pmo/class/PMO_00054010 PMAPP-PMO LOOM
http://www.w3.org/2001/sw/hcls/ns/transmed/TMO_0152 TMO LOOM
http://purl.obolibrary.org/obo/SPD_0000791 SPD LOOM
http://purl.org/sig/ont/fma/fma67093 FMA LOOM
http://purl.obolibrary.org/obo/GO_0005694 NIGO LOOM
http://purl.obolibrary.org/obo/GO_0005694 RBO LOOM
http://purl.obolibrary.org/obo/GO_0005694 GO-EXT LOOM
http://purl.obolibrary.org/obo/GO_0005694 PDRO LOOM
http://purl.obolibrary.org/obo/GO_0005694 CLO LOOM
http://purl.obolibrary.org/obo/GO_0005694 OBI LOOM
http://purl.obolibrary.org/obo/GO_0005694 MIRO LOOM
http://purl.obolibrary.org/obo/GO_0005694 FOVT LOOM
http://purl.obolibrary.org/obo/GO_0005694 CCO LOOM
http://purl.obolibrary.org/obo/GO_0005694 REXO LOOM
http://purl.obolibrary.org/obo/GO_0005694 ONE LOOM
http://purl.obolibrary.org/obo/GO_0005694 GEXO LOOM
http://purl.obolibrary.org/obo/GO_0005694 EGO LOOM
http://purl.obolibrary.org/obo/GO_0005694 PHAGE LOOM
http://purl.obolibrary.org/obo/GO_0005694 CMPO LOOM
http://purl.obolibrary.org/obo/GO_0005694 PCL LOOM
http://purl.obolibrary.org/obo/GO_0005694 BIPON LOOM
http://purl.obolibrary.org/obo/GO_0005694 NIFDYS LOOM
http://purl.obolibrary.org/obo/GO_0005694 BERO LOOM
http://purl.obolibrary.org/obo/GO_0005694 HHEAR LOOM
http://purl.obolibrary.org/obo/GO_0005694 TXPO LOOM
http://purl.obolibrary.org/obo/GO_0005694 GSSO LOOM
http://purl.obolibrary.org/obo/GO_0005694 CHRO LOOM
http://purl.obolibrary.org/obo/GO_0005694 UPHENO LOOM
http://purl.obolibrary.org/obo/GO_0005694 OBI_IEE LOOM
http://purl.obolibrary.org/obo/GO_0005694 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0005694 KTAO LOOM
http://purl.obolibrary.org/obo/GO_0005694 REGN_GO LOOM
http://purl.obolibrary.org/obo/GO_0005694 RETO LOOM
http://purl.obolibrary.org/obo/GO_0005694 IDOMAL LOOM
http://purl.obolibrary.org/obo/GO_0005694 HINO LOOM
http://purl.obolibrary.org/obo/GO_0005694 MAXO LOOM
http://purl.obolibrary.org/obo/GO_0005694 AISM LOOM
http://purl.obolibrary.org/obo/GO_0005694 NMDCO LOOM
http://purl.obolibrary.org/obo/GO_0005694 OGSF LOOM
http://rdf.biosemantics.org/ontologies/genomecomponents#Chromosome GCO LOOM
http://purl.obolibrary.org/obo/ODGI.owl#Chromosome OGDI LOOM
http://purl.obolibrary.org/obo/NCIT_C13202 BERO LOOM
http://purl.obolibrary.org/obo/SO_0000340 HHEAR LOOM
http://purl.obolibrary.org/obo/SO_0000340 NIFSTD LOOM
http://purl.obolibrary.org/obo/SO_0000340 GENO LOOM
http://purl.org/obo/owl/GO#GO_0005694 BIOMODELS LOOM
http://purl.org/obo/owl/sequence#chromosome PEO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C13202 NCIT LOOM
http://purl.org/obo/owlapi/fma#FMA_67093 BIOMODELS LOOM
http://purl.bioontology.org/ontology/CSP/1255-7932 CRISP LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/91272006 SNOMEDCT LOOM