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Genomic Feature and Variation Ontology
Last uploaded:
October 14, 2016
| Acronym | GFVO |
| Visibility | Public |
| Description | The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). It is captures the contents of data files that adhere to the Generic Feature Format Version 3 (GFF3, http://www.sequenceontology.org/resources/gff3.html), the General Transfer Format (GTF, http://mblab.wustl.edu/GTF22.html), the Genome Variation Format Version 1 (GVF, http://www.sequenceontology.org/resources/gvf.html), and the Variant Call Format (VCF, http://vcftools.sourceforge.net/specs.html), as well as the FASTA format (http://en.wikipedia.org/wiki/FASTA_format). The creation of the ontology was inspired by previous work of Robert Hoehndorf on RDF2OWL (http://code.google.com/p/rdf2owl). NOTE: GFVO in BioPortal is a simplified version without ontology imports and having class/property equivalences removed. The full ontology is available at: http://www.biointerchange.org/gfvo |
| Status | Production |
| Format | OWL |
| Contact | Joachim Baran, kim@codamono.com |
| Categories | Biological Process, Biomedical Resources, Gene Product, Genomic and Proteomic, Human |
| Version | Released | Uploaded | Downloads |
|---|---|---|---|
| 1.0.6 (Parsed, Indexed, Metrics, Annotator) | 07/14/2015 | 10/14/2016 | OWL | CSV | RDF/XML | Diff |
| 1.0.5 (Archived) | 07/14/2015 | 10/13/2015 | OWL | Diff |
| 1.0.4 (Archived) | 07/14/2015 | 07/14/2015 | OWL | Diff |
| 1.0.3 (Archived) | 06/22/2014 | 05/26/2015 | OWL | Diff |
| 1.0.2 (Archived) | 06/22/2014 | 12/12/2014 | OWL | Diff |
| 1.0.0 (Archived) | 06/22/2014 | 11/03/2014 | OWL | Diff |
| 0.9.53 (Archived) | 06/22/2014 | 10/31/2014 | OWL | Diff |
| 0.9.50 (Archived) | 06/22/2014 | 10/29/2014 | OWL | Diff |
| 0.9.49 (Archived) | 06/22/2014 | 10/26/2014 | OWL | Diff |
| 0.9.47 (Archived) | 06/22/2014 | 10/20/2014 | OWL | Diff |
| 0.9.45 (Archived) | 06/22/2014 | 10/19/2014 | OWL | Diff |
| 0.9.44 (Archived) | 06/22/2014 | 09/01/2014 | OWL | Diff |
| 0.9.44 (Archived) | 06/22/2014 | 09/01/2014 | OWL | Diff |
| 0.9.42 (Archived) | 06/22/2014 | 08/28/2014 | OWL | Diff |
| 0.9.41 (Archived) | 06/22/2014 | 06/25/2014 | OWL | Diff |
| 0.9.41 (Archived) | 06/22/2014 | 06/25/2014 | OWL | Diff |
| 0.9.41 (Archived) | 06/22/2014 | 06/25/2014 | OWL | Diff |
| 0.9.40 (Archived) | 06/22/2014 | 06/23/2014 | OWL | Diff |
| 0.9.40 (Archived) | 06/22/2014 | 06/23/2014 | OWL | Diff |
| 0.9.39 (Archived) | 06/22/2014 | 06/22/2014 | OWL |
| more... | |||
No views of GFVO available
| Classes | 102 |
| Individuals | 0 |
| Properties | 33 |
| Maximum depth | 6 |
| Maximum number of children | 8 |
| Average number of children | 2 |
| Classes with a single child | 13 |
| Classes with more than 25 children | 0 |
| Classes with no definition | 0 |