Preferred Name

cell line

Synonyms
Definitions

The term 'line' is used when a culture has undergone an intentional experimental process to establish a more uniform and stable population of cells (see 'establishing cell line'). This will require one or more passages, but may involve additional selection processes. Through such passaging and/or selection processes, the resulting 'line' attains some level of genetic stability and compositional homogeneity which is typically absent in primary cultures. Because of their relative homogeneity, ‘lines’ are capable of being characterized and stably propagated over a period of time. A new *type* of cell line can be established not only through the passaging/selection of a primary culture, but also through experimental modifications of existing lines (e.g. immortalization, stable genetic modifications, drug selection for a resistant subset, etc.). The definition provided here establishes the 'scale' of cell populations that qualify as cell lines - specifically those with a shared propagation history in culture. In this way, the 'cell line' class demarcates populations that represent what researchers actually use in the practice of science - e.g. as inputs to culturing, experimentation, and sharing. The definition is such that cell lines will exhibit important attributes. For example, they will have a relatively homogenous cell type composition as they have experienced similar selective pressures due to their continuous co-propagation. In addition, these populations can also be characterized by a passage number, again owing to their common passaging history.  As defined here, 'cell line' can refer to a population of cells in active culture, applied experimentally, or stored in a quiescent state for future use. A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture). A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture).

ID

http://purl.obolibrary.org/obo/CLO_0000031

comment

The term 'line' is used when a culture has undergone an intentional experimental process to establish a more uniform and stable population of cells (see 'establishing cell line'). This will require one or more passages, but may involve additional selection processes. Through such passaging and/or selection processes, the resulting 'line' attains some level of genetic stability and compositional homogeneity which is typically absent in primary cultures. Because of their relative homogeneity, ‘lines’ are capable of being characterized and stably propagated over a period of time. A new *type* of cell line can be established not only through the passaging/selection of a primary culture, but also through experimental modifications of existing lines (e.g. immortalization, stable genetic modifications, drug selection for a resistant subset, etc.). The definition provided here establishes the 'scale' of cell populations that qualify as cell lines - specifically those with a shared propagation history in culture. In this way, the 'cell line' class demarcates populations that represent what researchers actually use in the practice of science - e.g. as inputs to culturing, experimentation, and sharing. The definition is such that cell lines will exhibit important attributes. For example, they will have a relatively homogenous cell type composition as they have experienced similar selective pressures due to their continuous co-propagation. In addition, these populations can also be characterized by a passage number, again owing to their common passaging history.  As defined here, 'cell line' can refer to a population of cells in active culture, applied experimentally, or stored in a quiescent state for future use.

editor preferred term

cell line

imported from

http://purl.obolibrary.org/obo/clo.owl

label

cell line

prefixIRI

CLO:0000031

prefLabel

cell line

term editor

MB, SS, JZ, MAH, BP, CS, YH

textual definition

A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture).

A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture).

subClassOf

http://purl.obolibrary.org/obo/OBI_0001905

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http://purl.obolibrary.org/obo/CLO_0000031 ERO SAME_URI
https://w3id.org/biolink/vocab/CellLine BIOLINK LOOM
https://w3id.org/gold.vocab/Cell-Line GOLDTERMS LOOM
http://purl.bioontology.org/ontology/MESH/D002460 MESH LOOM
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http://purl.org/zonmw/covid19/10170 ZONMW-CONTENT LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0007600 OCHV LOOM
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http://purl.obolibrary.org/obo/CLO_0000031 PDRO LOOM
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http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16403 NCIT LOOM
http://semanticscience.org/resource/cell-line MATERIALSMINE LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_11036 NIFSTD LOOM
http://www.w3.org/2001/sw/hcls/ns/transmed/TMO_0036 TMO LOOM
http://purl.obolibrary.org/obo/ID_0000020 BCTEO LOOM
https://w3id.org/reproduceme#CellLine REPRODUCE-ME LOOM
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http://jermontology.org/ontology/JERMOntology#Cell_line JERM LOOM
http://ccdb.ucsd.edu/SAO/1.2#sao938874695 SAO LOOM
http://semanticscience.org/resource/SIO_010054 HHEARP LOOM
http://semanticscience.org/resource/SIO_010054 SIO LOOM
http://semanticscience.org/resource/SIO_010054 CHEAR LOOM
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http://semanticscience.org/resource/SIO_010054 HASCO LOOM
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https://w3id.org/biolink/vocab/CellLine BIOLINK LOOM
http://chem.deri.ie/granatum#Cell_line CANCO LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#2591 OCHV LOOM
http://scai.fraunhofer.de/CSEO#Cell_line CSEO LOOM
http://www.phoc.org.cn/pmo/class/PMO_00000621 PMAPP-PMO LOOM
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http://purl.bioontology.org/net/brunel/panda#CellLine PANDA LOOM