Ontology of Host-Pathogen Interactions

Last uploaded: September 30, 2019
Preferred Name

alimentary part of gastrointestinal system

Synonyms

alimentary tract

gastroenterological system

gastrointestinal system

gastro-intestinal system

gastrointestinal (GI) tract

gastrointestinal tract

GI tract

alimentary system

Definitions

The part of the digestive system that excludes the hepatobiliary system.

ID

http://purl.obolibrary.org/obo/UBERON_0005409

editor note

the decision to split digestive and gastrointestinal in this way may be revisited. As it currently stands, this class more closely aligns what MA calls the alimentary system

existence ends during

http://purl.obolibrary.org/obo/UBERON_0000066

external_definition

The system that includes the esophagus, stomach, small and large intestine, anus, liver, biliary tract, and pancreas[ncithesaurus:Gastrointestinal_System].

external_ontology_notes

that many anatomy ontologies consider this synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class. We have one entity that is part of both gastrointestinal and hepatobiliary systems: hepatopancreatic ampulla.

has_related_synonym

alimentary tract

gastroenterological system

gastrointestinal system

gastro-intestinal system

gastrointestinal (GI) tract

gastrointestinal tract

GI tract

alimentary system

homology_notes

All metazoans (with degenerate exceptions) have some sort of digestive cavity with a means of entrance to and exit from it.[well established][VHOG]

id

UBERON:0005409

in_subset

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

label

alimentary part of gastrointestinal system

notation

UBERON:0005409

part_of

http://purl.obolibrary.org/obo/UBERON_0001007

prefLabel

alimentary part of gastrointestinal system

treeView

http://purl.obolibrary.org/obo/UBERON_0001007

数据库_交叉_引用

http://linkedlifedata.com/resource/umls/id/C0012240

http://www.snomedbrowser.com/Codes/Details/373871007

EMAPA:16246

EV:0100056

EHDAA2:0000110

MA:0000323

BTO:0000058

NCIT:C12378

EHDAA:514

FMA:71132

CALOHA:TS-0407

VHOG:0000412

galen:GastrointestinalTract

GAID:294

MESH:A03.492

UMLS:C0012240

文本定义

The part of the digestive system that excludes the hepatobiliary system.

有_obo_命名空间

uberon

subClassOf

http://purl.obolibrary.org/obo/UBERON_0000467

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0005409 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 XPO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 ICDO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 UBERON SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 DOID SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 PATO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 CL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 MONDO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 NPOKB SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 OAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 RBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 CLO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 OVAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 FOVT SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 OCMR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 HSO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 PCL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 NIFDYS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 CTENO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 CEPH SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 ONS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 NBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 HHEAR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 ODAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 UPHENO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 AERO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 OCVDAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 KTAO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 MAXO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 ENVO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 FNS-H SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 AISM SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 NMDCO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0005409 GO-PLUS LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 XPO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 ICDO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 UBERON LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 DOID LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 PATO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 OBA LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 CL LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 NPOKB LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 OAE LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 RBO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 CLO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 OVAE LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 FOVT LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 OCMR LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 HSO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 PCL LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 NIFDYS LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 CTENO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 ONS LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 NBO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 HHEAR LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 ODAE LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 UPHENO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 OCVDAE LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 KTAO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 MAXO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 ENVO LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 FNS-H LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 AISM LOOM
http://purl.obolibrary.org/obo/UBERON_0005409 NMDCO LOOM