Experimental Factor Ontology

Last uploaded: April 15, 2024

Preferred Name	ChIP-seq
Synonyms
Definitions	ChIP-seq is an assay in which chromatin immunoprecipitation with high throughput sequencing is used to identify the cistrome of DNA-associated proteins.
ID	http://www.ebi.ac.uk/efo/EFO_0002692
created_by	Helen Parkinson
creator	Helen Parkinson
database_cross_reference	NCIt:C106049
definition	ChIP-seq is an assay in which chromatin immunoprecipitation with high throughput sequencing is used to identify the cistrome of DNA-associated proteins.
definition_citation	http://en.wikipedia.org/wiki/Chip-Sequencing
label	ChIP-seq
preferred label	ChIP-seq
prefixIRI	efo1:EFO_0002692
prefLabel	ChIP-seq
SRA_label	ChIP-Seq (Direct sequencing of chromatin immunoprecipitates)
subClassOf	http://www.ebi.ac.uk/efo/EFO_0005032 http://www.ebi.ac.uk/efo/EFO_0001456
has_participant	http://www.ebi.ac.uk/efo/EFO_0002699

Delete	Subject	Author	Type	Created
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Mapping To	Ontology	Source
http://jermontology.org/ontology/JERMOntology#Chip-Seq	JERM	LOOM
http://purl.obolibrary.org/obo/FBcv_0003053	FB-CV	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C106049	NCIT	LOOM
http://edamontology.org/topic_3169	BERO	LOOM
http://edamontology.org/topic_3169	EDAM	LOOM
http://edamontology.org/topic_3169	ITO	LOOM
https://pat.nichd.nih.gov/patinvestigativetechniques/IT.08.02.01.01	PATIT	LOOM
http://purl.obolibrary.org/obo/OBI_0000716	OBI	REST