EDAM - The ontology of data analysis and management - mirGFF3 - Classes

Last uploaded: November 12, 2025

Id	http://edamontology.org/format_3864 http://edamontology.org/format_3864
Preferred Name	mirGFF3
Definitions	mirGFF3 is a common format for microRNA data resulting from small-RNA RNA-Seq workflows. mirGFF3 is a specialisation of GFF3; produced by small-RNA-Seq analysis workflows, usable and convertible with the miRTop API (https://mirtop.readthedocs.io/en/latest/), and consumable by tools for downstream analysis.
Synonyms	miRTop format
Type	http://www.w3.org/2002/07/owl#Class

prefLabel	mirGFF3
label	mirGFF3
comment	mirGFF3 is a specialisation of GFF3; produced by small-RNA-Seq analysis workflows, usable and convertible with the miRTop API (https://mirtop.readthedocs.io/en/latest/), and consumable by tools for downstream analysis.
hasExactSynonym	miRTop format
type	http://www.w3.org/2002/07/owl#Class
hasDefinition	mirGFF3 is a common format for microRNA data resulting from small-RNA RNA-Seq workflows.
Repository	https://github.com/miRTop/mirGFF3
inSubset	http://edamontology.org/bio http://edamontology.org/formats
Citation	https://doi.org/10.7490/f1000research.1115724.1
prefixIRI	format_3864
Example	https://github.com/miRTop/mirGFF3/blob/master/example.gff
Documentation	https://github.com/miRTop/mirGFF3/blob/master/definition.md
Created in	June 21, 2026
subClassOf	http://edamontology.org/format_3865 http://edamontology.org/format_1975

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