Biological Pathway Taxonomy

Last uploaded: March 30, 2022
Preferred Name

Li-Fraumeni Syndrome

Synonyms

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-1c2f5666-fb0e-41b4-96de-9a61d39ffca8

Organ_System: nervous system

PathwayType: signaling

Organ: bone

Tissue: epithelium

Tissue: Cartilage

Notes: Headnote: Li-Fraumeni syndrome (LFS), also known as sarcoma, breast, leukemia and adrenal gland (SBLA) syndrome, is an autosomal dominant cancer syndrome caused largely by a germline mutation in the TP53 tumor suppressor gene. LFS results in cancers most often occurring in childhood or young adulthood. Survivors also have an increased risk for developing multiple neoplasms, with particularly high occurrences of breast cancer, soft tissue sarcomas, and brain tumors. At least 70% of individuals with LFS have an identifiable germline mutation in TP53, while few families with cancers characteristic of LFS have mutations in the CHEK2 gene, also a tumor suppressor. Signaling description: The key processes involved in LFS are cell proliferation, block of apoptosis, loss of cell differentiation, and cell cycle arrest. Normally, TP53 stimulates CDKN1A which inhibits the activity of CDK2 and CDK4. CDK2 and CDK4 suppress cell cycle and initiate cell proliferation and differentiation. TP53 promotes BAX and BBC3 resulting in activation of the apoptotic caspase cascade. In addition, TP53 induces CEBPA that is involved in cell proliferation and differentiation. CHEK2 phosphorylates and activates TP53. Outcome effects: Mutations in TP53 and CHEK2 genes lead to redundant proliferation, block of apoptosis, and the disruption of cell cycle and differentiation Mutated genes: Mutated genes are shown in white-out style.

CellType: mammary epithelial cell

Description: Li-Fraumeni syndrome (LFS) is an autosomal dominant cancer syndrome occuring due to a germline mutation in the TP53 gene. Pathway is built manually using published studies.

CellType: chondroblast

NodeType: Pathway

PMID: 19056046

Tissue: connective tissue

Organ_System: integumentary system

Organ: breast

CellType: fibroblast

Pathway_Author: M. Zharkova  ORCID:0000-0001-8706-9411

Source: Diseases

PMID: 20522432

ID

urn:agi-pathway:uuid-1c2f5666-fb0e-41b4-96de-9a61d39ffca8

database_cross_reference

PS:PathwayType

PS:Description

PS:Tissue

PS:Pathway_Author

PS:Link

PS:CellType

PS:Organ_System

PS:PMID

PS:NodeType

PS:Notes

PS:Organ

PS:Source

has_exact_synonym

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-1c2f5666-fb0e-41b4-96de-9a61d39ffca8

Organ_System: nervous system

PathwayType: signaling

Organ: bone

Tissue: epithelium

Tissue: Cartilage

Notes: Headnote: Li-Fraumeni syndrome (LFS), also known as sarcoma, breast, leukemia and adrenal gland (SBLA) syndrome, is an autosomal dominant cancer syndrome caused largely by a germline mutation in the TP53 tumor suppressor gene. LFS results in cancers most often occurring in childhood or young adulthood. Survivors also have an increased risk for developing multiple neoplasms, with particularly high occurrences of breast cancer, soft tissue sarcomas, and brain tumors. At least 70% of individuals with LFS have an identifiable germline mutation in TP53, while few families with cancers characteristic of LFS have mutations in the CHEK2 gene, also a tumor suppressor. Signaling description: The key processes involved in LFS are cell proliferation, block of apoptosis, loss of cell differentiation, and cell cycle arrest. Normally, TP53 stimulates CDKN1A which inhibits the activity of CDK2 and CDK4. CDK2 and CDK4 suppress cell cycle and initiate cell proliferation and differentiation. TP53 promotes BAX and BBC3 resulting in activation of the apoptotic caspase cascade. In addition, TP53 induces CEBPA that is involved in cell proliferation and differentiation. CHEK2 phosphorylates and activates TP53. Outcome effects: Mutations in TP53 and CHEK2 genes lead to redundant proliferation, block of apoptosis, and the disruption of cell cycle and differentiation Mutated genes: Mutated genes are shown in white-out style.

CellType: mammary epithelial cell

Description: Li-Fraumeni syndrome (LFS) is an autosomal dominant cancer syndrome occuring due to a germline mutation in the TP53 gene. Pathway is built manually using published studies.

CellType: chondroblast

NodeType: Pathway

PMID: 19056046

Tissue: connective tissue

Organ_System: integumentary system

Organ: breast

CellType: fibroblast

Pathway_Author: M. Zharkova  ORCID:0000-0001-8706-9411

Source: Diseases

PMID: 20522432

id

urn:agi-pathway:uuid-1c2f5666-fb0e-41b4-96de-9a61d39ffca8

label

Li-Fraumeni Syndrome

notation

uuid-1c2f5666-fb0e-41b4-96de-9a61d39ffca8

prefLabel

Li-Fraumeni Syndrome

treeView

urn:agi-folder:l

urn:agi-folder:cartilage

urn:agi-folder:nervous_system

urn:agi-folder:hereditary_syndromes_associated_with_breast_and/or_ovarian_cancer

urn:agi-folder:connective_tissue

urn:agi-folder:epithelium

urn:agi-folder:integumentary_system

subClassOf

urn:agi-folder:l

urn:agi-folder:cartilage

urn:agi-folder:nervous_system

urn:agi-folder:hereditary_syndromes_associated_with_breast_and/or_ovarian_cancer

urn:agi-folder:connective_tissue

urn:agi-folder:epithelium

urn:agi-folder:integumentary_system

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http://purl.obolibrary.org/obo/DOID_3012 HHEAR LOOM
http://purl.obolibrary.org/obo/DOID_3012 NIFSTD LOOM
http://purl.obolibrary.org/obo/DOID_3012 FNS-H LOOM
http://identifiers.org/omim/151623 REXO LOOM
http://identifiers.org/omim/151623 GEXO LOOM
http://identifiers.org/omim/151623 RETO LOOM
http://purl.obolibrary.org/obo/OMIT_0017298 OMIT LOOM
http://www.owl-ontologies.com/NPOntology.owl#DOID_3012 NATPRO LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/428850001 SNOMEDCT LOOM
http://www.limics.org/hrdo/rdfns#pat_id_196 HRDO LOOM
http://id.nlm.nih.gov/mesh/D016864 MDM LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.700.600 RH-MESH LOOM
http://purl.obolibrary.org/obo/NCIT_C3476 BERO LOOM
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http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3476 NCIT LOOM
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http://purl.jp/bio/4/id/200906098156792760 IOBC LOOM
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http://www.gamuts.net/entity#Li_Fraumeni_syndrome GAMUTS LOOM
http://purl.bioontology.org/ontology/CSP/4006-0058 CRISP LOOM