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G Protein-Coupled Receptor BioAssays Ontology
Last uploaded:
October 28, 2013
| Acronym | BAO-GPCR |
| Visibility | Public |
| Description | The G protein-coupled receptors (GPCRs) ontology (http://www.bioassayontology.org/bao_gpcr) describes pharmacology, biochemistry and physiology of these important and therapeutically promising class of academic and pharmaceutical research targets. Incorporation and comparison of various small molecule screening data sets, such as those deposited in PubChem, ChEMBL, KEGG, PDSP, and/or IUPHAR databases, requires a formalized electronic organization system. In order to bridge the gap between the overflow of HTS data and the bottleneck of integrated analysis tools, herein, we provide the first comprehensive GPCR ontology. The development and utility of GPCR ontology was based on previously developed BioAssay Ontology (BAO). The GPCR ontology contains information about biochemical, pharmacological, and functional properties of individual GPCRs as well as GPCR-selective ligands inclusive of their HTS screening results and other records. This provides the first all-inclusive GPCR ontology with all available data to model the relationship between the GPCR binding sites and their physiologic and pharmacologic role in physiology via small molecule chemical structures. We developed this system using emerging semantic technologies, by leveraging existing and descriptive domain level ontologies. |
| Status | Beta |
| Format | OWL |
| Categories | License Information | This ontology is made available under the Creative Commons Attribution License Version 3 |
| Bibliographic reference |
http://www.schurerlab.org/home/publications
http://www.schurerlab.org/home/publications
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| Contact | Stephan Schurer ([email protected]) |
| Creation date | October 28, 2013
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| Documentation |
https://github.com/BioAssayOntology
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| Homepage |
http://www.bioassayontology.org/
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| Submission date | October 28, 2013
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| Version information |
1.1
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| uri |
http://bioassayontology.org/bao/bao_gpcr_v1.1.owl
http://bioassayontology.org/bao/bao_gpcr_v1.1.owl
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| Version | Released | Uploaded | Downloads |
|---|---|---|---|
| 1.1 (Parsed, Indexed, Metrics, Annotator) | 10/28/2013 | 10/28/2013 | OWL | CSV | RDF/XML | Diff |
| 1.1 (Archived) | 10/28/2013 | 10/28/2013 | OWL |
| 1.1 (Archived) | 10/24/2013 | 10/24/2013 | OWL |
| 1.1 (Archived) | 10/24/2013 | 10/24/2013 | OWL |
| 1.1 (Archived) | 10/24/2013 | 10/24/2013 | OWL |
| 1.1 (Archived) | 10/24/2013 | 10/24/2013 | OWL |
| 1.1 (Archived) | 10/24/2013 | 10/24/2013 | OWL |
| 1.1 (Archived) | 10/23/2013 | 10/23/2013 | OWL |
| 1.1 (Archived) | 10/23/2013 | 10/23/2013 | OWL |
| 1.1 (Archived) | 10/23/2013 | 10/23/2013 | OWL |
| 1.1 (Archived) | 10/23/2013 | 10/23/2013 | OWL |
| 1.1 (Archived) | 06/17/2013 | 08/28/2013 | OWL |
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No views of BAO-GPCR available
| Classes | 904 |
| Individuals | 345 |
| Properties | 36 |
| Maximum depth | 4 |
| Maximum number of children | 321 |
| Average number of children | 9 |
| Classes with a single child | 9 |
| Classes with more than 25 children | 4 |
| Classes with no definition | 863 |