PMO Precision Medicine Ontology

Last uploaded: December 16, 2020
Preferred Name

DNA Replication

Synonyms
Definitions

A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.

ID

http://www.phoc.org.cn/pmo/class/PMO_00014497

Database_Cross_Reference

MTH:NOCODE

AOD:0000021658

AOD:0000001917

SNOMEDCT_US:74256009

SNMI:F-E2670

LCH_NW:sh90005926

CHV:0000041872

CSP:2102-4920

NCI_NCI-GLOSS:CDR0000597136

NCI:C16514

GO:GO:0006260

AOD:0000021657

NCI:C18125

MSH:D004261

CSP:2102-4830

CSP:3099-6564

CHV:0000004068

Definition

A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.

label

DNA Replication

MCID

MC00183472

PMOID

PMO:00014497

prefixIRI

pmo:PMO_00014497

prefLabel

DNA Replication

Synonym

Replication, DNA

DNA Synthesis

dna replications

DNA replication (finding)

DNA synthesis

DNA replication

deoxyribonucleic acid synthesis

dna replication

dna synthesis

Deoxyribonucleic acid replication

synthesis dna

Replication

Replications, DNA

Deoxyribonucleic acid replication (finding)

replication

DNA biosynthesis

DNA Replications

Tree Number

T4.5.5

subClassOf

http://www.phoc.org.cn/pmo/class/PMO_00014495

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/GO_0006260 FYPO LOOM
http://doe-generated-ontology.com/OntoAD#C0598312 ONTOAD LOOM
http://purl.obolibrary.org/obo/GO_0006260 OBI LOOM
http://purl.obolibrary.org/obo/GO_0006260 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0006260 GO LOOM
http://purl.obolibrary.org/obo/GO_0006260 FYPO LOOM
http://purl.bioontology.org/ontology/MESH/D004261 MESH LOOM
http://www.semanticweb.org/DMO#DNA_replication ADMO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.111.087.222 RH-MESH LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16514 NCIT LOOM
http://localhost/plosthes.2017-1#3913 PLOSTHES LOOM
http://purl.obolibrary.org/obo/IEV_0000393 PTS LOOM
http://purl.obolibrary.org/obo/NCIT_C16514 BERO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.149.115.222 RH-MESH LOOM
http://www.projecthalo.com/aura#DNA-Replication AURA LOOM
http://purl.bioontology.org/ontology/SNMI/F-E2670 SNMI LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G05.355.200 RH-MESH LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/74256009 SNOMEDCT LOOM
http://purl.org/obo/owl/GO#GO_0006260 NPO LOOM
http://purl.org/obo/owl/GO#GO_0006260 BIOMODELS LOOM
http://biomodels.net/SBO/SBO_0000204 SBO LOOM
http://purl.bioontology.org/ontology/CSP/2102-4830 CRISP LOOM
http://www.ifomis.org/acgt/1.0#DNAReplication ACGT-MO LOOM
http://purl.obolibrary.org/obo/UPa_UPA00326 UPA LOOM
http://purl.obolibrary.org/obo/OMIT_0005518 OMIT LOOM
http://purl.obolibrary.org/obo/MESH_D004261 BERO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D004261 RH-MESH LOOM
http://purl.obolibrary.org/obo/GO_0006260 NIGO LOOM
http://purl.obolibrary.org/obo/GO_0006260 GO-EXT LOOM
http://purl.obolibrary.org/obo/GO_0006260 PDRO LOOM
http://purl.obolibrary.org/obo/GO_0006260 HOIP LOOM
http://purl.obolibrary.org/obo/GO_0006260 ONE LOOM
http://purl.obolibrary.org/obo/GO_0006260 OBI_BCGO LOOM
http://purl.obolibrary.org/obo/GO_0006260 EGO LOOM
http://purl.obolibrary.org/obo/GO_0006260 PHAGE LOOM
http://purl.obolibrary.org/obo/GO_0006260 COVID-19 LOOM
http://purl.obolibrary.org/obo/GO_0006260 BERO LOOM
http://purl.obolibrary.org/obo/GO_0006260 TXPO LOOM
http://purl.obolibrary.org/obo/GO_0006260 UPHENO LOOM
http://purl.obolibrary.org/obo/GO_0006260 OMP LOOM
http://purl.obolibrary.org/obo/GO_0006260 OBI_IEE LOOM
http://purl.obolibrary.org/obo/GO_0006260 FTC LOOM
http://purl.obolibrary.org/obo/GO_0006260 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0006260 CHIRO LOOM
http://purl.obolibrary.org/obo/GO_0006260 REGN_GO LOOM
http://purl.obolibrary.org/obo/GO_0006260 ZP LOOM
http://purl.obolibrary.org/obo/GO_0006260 OGSF LOOM
http://purl.obolibrary.org/obo/HINO_0015388 HINO LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#4068 OCHV LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0012902 OCHV LOOM
http://purl.jp/bio/4/id/200906067068518559 IOBC LOOM