Preferred Name

alimentary part of gastrointestinal system
Synonyms

alimentary tract

gastrointestinal system

gastro-intestinal system

gastrointestinal (GI) tract

gastrointestinal tract

GI tract

alimentary system

Definitions

The part of the digestive system that excludes the hepatobiliary system.

ID

http://purl.obolibrary.org/obo/UBERON_0005409

database_cross_reference

http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12378

http://linkedlifedata.com/resource/umls/id/C0012240

http://www.snomedbrowser.com/Codes/Details/373871007

EMAPA:16246

EV:0100056

EHDAA2:0000110

MA:0000323

BTO:0000058

EHDAA:514

FMA:71132

CALOHA:TS-0407

VHOG:0000412

galen:GastrointestinalTract

GAID:294

MESH:A03.492

UMLS:C0012240

definition

The part of the digestive system that excludes the hepatobiliary system.

editor note

the decision to split digestive and gastrointestinal in this way may be revisited. As it currently stands, this class more closely aligns what MA calls the alimentary system

existence ends during

http://purl.obolibrary.org/obo/UBERON_0000066

existence ends during or before

http://purl.obolibrary.org/obo/UBERON_0000066

external_definition

The system that includes the esophagus, stomach, small and large intestine, anus, liver, biliary tract, and pancreas[ncithesaurus:Gastrointestinal_System].

external_ontology_notes

that many anatomy ontologies consider this synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class. We have one entity that is part of both gastrointestinal and hepatobiliary systems: hepatopancreatic ampulla.

has_obo_namespace

uberon

has_related_synonym

alimentary tract

gastrointestinal system

gastro-intestinal system

gastrointestinal (GI) tract

gastrointestinal tract

GI tract

alimentary system

homology_notes

All metazoans (with degenerate exceptions) have some sort of digestive cavity with a means of entrance to and exit from it.[well established][VHOG]

id

UBERON:0005409

imported from

http://purl.obolibrary.org/obo/oae.owl

http://purl.obolibrary.org/obo/uberon.owl

in_subset

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

label

alimentary part of gastrointestinal system

notation

UBERON:0005409

part_of

http://purl.obolibrary.org/obo/UBERON_0001007

prefLabel

alimentary part of gastrointestinal system

treeView

http://purl.obolibrary.org/obo/UBERON_0001007

subClassOf

http://purl.obolibrary.org/obo/UBERON_0000467

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Create mapping

Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0005409 CL SAME_URI
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