Human Reference Atlas

Last uploaded: June 14, 2024
Preferred Name

amygdala
Synonyms

nucleus amygdalae

corpus amygdaloideum

amygdaloid nucleus

corpus amygdalae

amygdaloid nuclear group

amygdaloid area

amygdaloid nuclear complex

amygdaloid body

amygdaloid complex

archistriatum

amygdaloid nuclear groups

Definitions

Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM).

ID

http://purl.obolibrary.org/obo/UBERON_0001876

altLabel

nucleus amygdalae

corpus amygdaloideum

amygdaloid nucleus

corpus amygdalae

amygdaloid nuclear group

amygdaloid area

amygdaloid nuclear complex

amygdaloid body

amygdaloid complex

archistriatum

amygdaloid nuclear groups

ccf_is_provisional

false

ccf_part_of

http://purl.obolibrary.org/obo/UBERON_0019264

ccf_pref_label

amygdaloid complex

definition

Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM).

depiction

http://upload.wikimedia.org/wikipedia/commons/8/8b/Amyg.png

external_definition

Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA:61841]

external_ontology_notes

MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype

has exact synonym

amygdaloid nuclear complex

amygdaloid body

amygdaloid complex

archistriatum

amygdaloid nuclear groups

has related synonym

nucleus amygdalae

corpus amygdaloideum

amygdaloid nucleus

corpus amygdalae

amygdaloid nuclear group

amygdaloid area

has_obo_namespace

uberon

has_relational_adjective

amygdalar

homology_notes

One part of the striatum is called the archistriatum. (...) The archistriatum of fishes consists of several indistinctly segregated nuclei called the amygdaloid (...) complex. Tetrapods retain the structure, and in mammals the corresponding amygdala is a globular mass that tends to be ventral to the other basal nuclei.[well established][VHOG]

id

UBERON:0001876

in_subset

http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

label

amygdala

notation

UBERON:0001876

prefLabel

amygdala

present in taxon

http://purl.obolibrary.org/obo/NCBITaxon_9606

xRef

MIAA:0000289

DHBA:10361

MA:0000887

EV:0100190

BAMS:AMY

EFO:0000252

BAMS:Amygdaloid_complex

BAMS:Amy

MAT:0000289

Wikipedia:Amygdala

HBA:4327

PBA:4002

FMA:61841

NCIT:C12440

CALOHA:TS-0037

BIRNLEX:1241

BAMS:Amygdala

VHOG:0001277

SCTID:279404004

EMAPA:32672

UMLS:C0002708

EV:0100189

BM:Tel-Am

BAMS:Amg

BTO:0001042

GAID:616

neuronames:237

EMAPA:36051

MESH:D000679

subClassOf

http://purl.obolibrary.org/obo/UBERON_0002420

http://purl.obolibrary.org/obo/UBERON_0005401

Delete Subject Author Type Created
No notes to display
Create mapping

Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0001876 CL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 NPOKB SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 UBERON SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 CCONT SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 OBI_BCGO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 PCL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 EPIO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 BERO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 HHEAR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 UPHENO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 FNS-H SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001876 CL LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_1241 NIFSTD LOOM
http://purl.obolibrary.org/obo/NCIT_C12440 BERO LOOM
http://cocomac.g-node.org/services/custom_sql_query.php?sql=SELECT%20*%20from%20BrainMaps_BrainSiteAcronyms%20where%20ID=11 NIFSTD LOOM
http://cocomac.g-node.org/services/custom_sql_query.php?sql=SELECT%20*%20from%20BrainMaps_BrainSiteAcronyms%20where%20ID=2035 NIFSTD LOOM
http://purl.obolibrary.org/obo/EMAPA_32672 EMAPA LOOM
http://purl.bioontology.org/ontology/CSP/0480-2818 CRISP LOOM
http://radlex.org/RID/RID6518 RADLEX LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Amygdala APANEUROCLUSTER LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Amygdala APAONTO LOOM
http://neuromorpho.org/ontologies/vertebrateH.owl#NMOBr_151 NMOBR LOOM
http://purl.obolibrary.org/obo/XAO_0004531 XPO LOOM
http://purl.obolibrary.org/obo/XAO_0004531 XAO LOOM
http://www.semanticweb.org/ontologies/2009/9/Ontology1255357986125.owl#Amygdala BRCT LOOM
http://purl.obolibrary.org/obo/MAT_0000289 MAT LOOM
http://purl.obolibrary.org/obo/VHOG_0001277 VHOG LOOM
http://www.projecthalo.com/aura#Amygdala AURA LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0002708 OCHV LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_1241 BIRNLEX LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#A08.186.211.464.090 RH-MESH LOOM
http://purl.obolibrary.org/obo/OMIT_0002093 OMIT LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D000679 RH-MESH LOOM
http://www.case.edu/EpSO.owl#Amygdala MEPO LOOM
http://purl.obolibrary.org/obo/BTO_0001042 DTO LOOM
http://purl.obolibrary.org/obo/BTO_0001042 BTO LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 NPOKB LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 UBERON LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 CCONT LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 OBI_BCGO LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 PCL LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 EPIO LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 GO-PLUS LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 HHEAR LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 UPHENO LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 FNS-H LOOM
http://purl.obolibrary.org/obo/UBERON_0001876 OBA LOOM
http://cocomac.g-node.org/services/custom_sql_query.php?sql=SELECT%20*%20from%20BrainMaps_BrainSiteAcronyms%20where%20ID=989 NIFSTD LOOM
http://purl.bioontology.org/ontology/MESH/D000679 MESH LOOM
http://purl.org/sig/ont/fma/fma61841 FMA LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#A08.186.211.730.885.287.249.152 RH-MESH LOOM
http://localhost/plosthes.2017-1#10486 PLOSTHES LOOM
http://www.radlex.org/RID/RID6518 RADLEX LOOM
http://purl.obolibrary.org/obo/MA_0000887 MA LOOM
http://purl.org/obo/owlapi/fma#FMA_61841 BIOMODELS LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12440 NCIT LOOM