Human Interaction Network Ontology

Last uploaded: June 27, 2014
Preferred Name

DNA Replication
Synonyms
Definitions

Edited: D'Eustachio, P, Joshi-Tope, G, Nickerson, E, 0000-00-00 00:00:00 Studies in the past decade have suggested that the basic mechanism of DNA replication initiation is conserved in all kingdoms of life. Initiation in unicellular eukaryotes, in particular Saccharomyces cerevisiae (budding yeast), is well understood, and has served as a model for studies of DNA replication initiation in multicellular eukaryotes, including humans. In general terms, the first step of initiation is the binding of the replication initiator to the origin of replication. The replicative helicase is then assembled onto the origin, usually by a helicase assembly factor. Either shortly before or shortly after helicase assembly, some local unwinding of the origin of replication occurs in a region rich in adenine and thymine bases (often termed a DNA unwinding element, DUE). The unwound region provides the substrate for primer synthesis and initiation of DNA replication. The best-defined eukaryotic origins are those of S. cerevisiae, which have well-conserved sequence elements for initiator binding, DNA unwinding and binding of accessory proteins. In multicellular eukaryotes, unlike S. cerevisiae, these loci appear not to be defined by the presence of a DNA sequence motif. Indeed, choice of replication origins in a multicellular eukaryote may vary with developmental stage and tissue type. In cell-free models of metazoan DNA replication, such as the one provided by Xenopus egg extracts, there are only limited DNA sequence specificity requirements for replication initiation (Kelly & Brown 2000; Bell & Dutta 2002; Marahrens & Stillman 1992; Cimbora & Groudine 2001; Mahbubani et al 1992, Hyrien & Mechali 1993). Reviewed: Mendez, J, Aladjem, M, 0000-00-00 00:00:00 Authored: Bambara, RA, Catlett, M, Davey, MJ, Forsburg, S, O'Donnell, M, Tom, S, Tye, BK, 2003-01-06 00:00:00

ID

http://purl.obolibrary.org/obo/HINO_0015388

comment

Edited: D'Eustachio, P, Joshi-Tope, G, Nickerson, E, 0000-00-00 00:00:00

Studies in the past decade have suggested that the basic mechanism of DNA replication initiation is conserved in all kingdoms of life. Initiation in unicellular eukaryotes, in particular Saccharomyces cerevisiae (budding yeast), is well understood, and has served as a model for studies of DNA replication initiation in multicellular eukaryotes, including humans. In general terms, the first step of initiation is the binding of the replication initiator to the origin of replication. The replicative helicase is then assembled onto the origin, usually by a helicase assembly factor. Either shortly before or shortly after helicase assembly, some local unwinding of the origin of replication occurs in a region rich in adenine and thymine bases (often termed a DNA unwinding element, DUE). The unwound region provides the substrate for primer synthesis and initiation of DNA replication. The best-defined eukaryotic origins are those of S. cerevisiae, which have well-conserved sequence elements for initiator binding, DNA unwinding and binding of accessory proteins. In multicellular eukaryotes, unlike S. cerevisiae, these loci appear not to be defined by the presence of a DNA sequence motif. Indeed, choice of replication origins in a multicellular eukaryote may vary with developmental stage and tissue type. In cell-free models of metazoan DNA replication, such as the one provided by Xenopus egg extracts, there are only limited DNA sequence specificity requirements for replication initiation (Kelly & Brown 2000; Bell & Dutta 2002; Marahrens & Stillman 1992; Cimbora & Groudine 2001; Mahbubani et al 1992, Hyrien & Mechali 1993).

Reviewed: Mendez, J, Aladjem, M, 0000-00-00 00:00:00

Authored: Bambara, RA, Catlett, M, Davey, MJ, Forsburg, S, O'Donnell, M, Tom, S, Tye, BK, 2003-01-06 00:00:00

definition source

Pubmed8223461

Pubmed1579437

Pubmed10966477

Reactome, http://www.reactome.org

Pubmed11257218

Pubmed12045100

Pubmed1536007

label

DNA Replication

located_in

http://purl.obolibrary.org/obo/NCBITaxon_9606

prefixIRI

HINO:0015388

prefLabel

DNA Replication

seeAlso

Reactome Database ID Release 4369306

ReactomeREACT_383

subClassOf

http://purl.obolibrary.org/obo/INO_0000021

has_part

http://purl.obolibrary.org/obo/HINO_0015226

http://purl.obolibrary.org/obo/HINO_0015246

http://purl.obolibrary.org/obo/HINO_0015386

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Mapping To Ontology Source
http://purl.obolibrary.org/obo/GO_0006260 FYPO LOOM
http://purl.bioontology.org/ontology/MESH/D004261 MESH LOOM
http://www.semanticweb.org/DMO#DNA_replication ADMO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.111.087.222 RH-MESH LOOM
http://doe-generated-ontology.com/OntoAD#C0598312 ONTOAD LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16514 NCIT LOOM
http://localhost/plosthes.2017-1#3913 PLOSTHES LOOM
http://purl.obolibrary.org/obo/IEV_0000393 PTS LOOM
http://purl.obolibrary.org/obo/NCIT_C16514 BERO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.149.115.222 RH-MESH LOOM
http://www.phoc.org.cn/pmo/class/PMO_00014497 PMAPP-PMO LOOM
http://www.projecthalo.com/aura#DNA-Replication AURA LOOM
http://purl.bioontology.org/ontology/SNMI/F-E2670 SNMI LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G05.355.200 RH-MESH LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/74256009 SNOMEDCT LOOM
http://purl.org/obo/owl/GO#GO_0006260 NPO LOOM
http://purl.org/obo/owl/GO#GO_0006260 BIOMODELS LOOM
http://biomodels.net/SBO/SBO_0000204 SBO LOOM
http://purl.bioontology.org/ontology/CSP/2102-4830 CRISP LOOM
http://www.ifomis.org/acgt/1.0#DNAReplication ACGT-MO LOOM
http://purl.obolibrary.org/obo/UPa_UPA00326 UPA LOOM
http://purl.obolibrary.org/obo/OMIT_0005518 OMIT LOOM
http://purl.obolibrary.org/obo/MESH_D004261 BERO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D004261 RH-MESH LOOM
http://purl.obolibrary.org/obo/GO_0006260 NIGO LOOM
http://purl.obolibrary.org/obo/GO_0006260 GO-EXT LOOM
http://purl.obolibrary.org/obo/GO_0006260 PDRO LOOM
http://purl.obolibrary.org/obo/GO_0006260 OBI LOOM
http://purl.obolibrary.org/obo/GO_0006260 HOIP LOOM
http://purl.obolibrary.org/obo/GO_0006260 ONE LOOM
http://purl.obolibrary.org/obo/GO_0006260 OBI_BCGO LOOM
http://purl.obolibrary.org/obo/GO_0006260 EGO LOOM
http://purl.obolibrary.org/obo/GO_0006260 PHAGE LOOM
http://purl.obolibrary.org/obo/GO_0006260 COVID-19 LOOM
http://purl.obolibrary.org/obo/GO_0006260 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0006260 BERO LOOM
http://purl.obolibrary.org/obo/GO_0006260 TXPO LOOM
http://purl.obolibrary.org/obo/GO_0006260 UPHENO LOOM
http://purl.obolibrary.org/obo/GO_0006260 OMP LOOM
http://purl.obolibrary.org/obo/GO_0006260 OBI_IEE LOOM
http://purl.obolibrary.org/obo/GO_0006260 FTC LOOM
http://purl.obolibrary.org/obo/GO_0006260 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0006260 CHIRO LOOM
http://purl.obolibrary.org/obo/GO_0006260 FYPO LOOM
http://purl.obolibrary.org/obo/GO_0006260 REGN_GO LOOM
http://purl.obolibrary.org/obo/GO_0006260 GO LOOM
http://purl.obolibrary.org/obo/GO_0006260 ZP LOOM
http://purl.obolibrary.org/obo/GO_0006260 OGSF LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#4068 OCHV LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0012902 OCHV LOOM
http://purl.jp/bio/4/id/200906067068518559 IOBC LOOM