Genomic Feature and Variation Ontology

Last uploaded: October 14, 2016
Preferred Name

Identifier

Synonyms
Definitions

An identifier labels an entity with preferably a single term that is interpreted as an accession. An accession labels entities that are part of a collection of similar type. More generic naming of entities can be achieved using the "Label" class. Encodes for the "seqid" column in GFF3 and GVF; encodes for the "seqname" column in GTF and "CHROM" column in VCF. Captures the "ID" attribute in GFF3 and GVF. Suitable for expression values of "individual-id" and "technology-platform-machine-id" pragmas in GVF. Encodes for the "ID" key/value property in VCF.

ID

https://www.codamono.com/biointerchange/gfvo#Identifier

comment

An identifier labels an entity with preferably a single term that is interpreted as an accession. An accession labels entities that are part of a collection of similar type. More generic naming of entities can be achieved using the "Label" class. Encodes for the "seqid" column in GFF3 and GVF; encodes for the "seqname" column in GTF and "CHROM" column in VCF. Captures the "ID" attribute in GFF3 and GVF. Suitable for expression values of "individual-id" and "technology-platform-machine-id" pragmas in GVF. Encodes for the "ID" key/value property in VCF.

isDefinedBy

http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41

http://www.ensembl.org/info/website/upload/gff.html

http://samtools.github.io/hts-specs/VCFv4.2.pdf

http://sequenceontology.org/resources/gvf.html

http://samtools.github.io/hts-specs/VCFv4.1.pdf

http://sequenceontology.org/resources/gff3.html

label

Identifier

prefixIRI

Identifier

prefLabel

Identifier

seeAlso

http://en.wikipedia.org/wiki/Identifier

subClassOf

https://www.codamono.com/biointerchange/gfvo#Label

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http://purl.obolibrary.org/obo/IAO_0020000 OHD LOOM
http://purl.obolibrary.org/obo/IAO_0020000 PROCO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 MCRO LOOM
http://purl.obolibrary.org/obo/T4FS_0000529 T4FS LOOM
http://semanticscience.org/resource/SIO_000115 NGBO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 ONS LOOM
http://purl.obolibrary.org/obo/IAO_0020000 VO LOOM
http://purl.obolibrary.org/obo/NCIT_C25364 ONS LOOM
http://purl.obolibrary.org/obo/IAO_0020000 FYPO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 VO LOOM
http://dicom.nema.org/resources/ontology/DCM/125010 DCM LOOM
http://edamontology.org/data_0842 EDAM LOOM
http://edamontology.org/data_0842 ITO LOOM
http://purl.bioontology.org/ontology/HL7/C1554104 HL7 LOOM
http://id.loc.gov/ontologies/bibframe/Identifier BIBLIOTEK-O LOOM
http://id.loc.gov/ontologies/bibframe/Identifier PMO LOOM
http://www.cidoc-crm.org/cidoc-crm/E42_Identifier CIDOC-CRM LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/118522005 SNOMEDCT LOOM
http://www.knowledgegrid.org/koro#KORO_307 KORO LOOM
http://www.owl-ontologies.com/Ontology1239104585.owl#Identifier BCGO LOOM
http://www.w3.org/2001/sw/hcls/ns/transmed/TMO_0137 TMO LOOM
https://www.fns-cloud.eu/GS1/FNS_H_0000000665 FNS-H LOOM
http://purl.org/spar/datacite/Identifier DATACITE LOOM
http://purl.bioontology.org/ontology/LNC/MTHU003116 LOINC LOOM
http://ontodm.com/OntoDT#OntoDT_184436 ONTODM-CORE LOOM
http://ontodm.com/OntoDT#OntoDT_184436 ONTODT LOOM
http://purl.bioontology.org/ontology/PMR.owl#Identifier PMR LOOM
http://purl.bioontology.org/ontology/LNC/LP72778-1 LOINC LOOM
http://purl.obolibrary.org/obo/IAO_0020000 DUO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 OMRSE LOOM
http://purl.obolibrary.org/obo/IAO_0020000 PDRO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 EUPATH LOOM
http://purl.obolibrary.org/obo/IAO_0020000 PLANA LOOM
http://purl.obolibrary.org/obo/IAO_0020000 OHD LOOM
http://purl.obolibrary.org/obo/IAO_0020000 ONE LOOM
http://purl.obolibrary.org/obo/IAO_0020000 AGRO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 ONTODM-CORE LOOM
http://purl.obolibrary.org/obo/IAO_0020000 ORCS LOOM
http://purl.obolibrary.org/obo/IAO_0020000 OOSTT LOOM
http://purl.obolibrary.org/obo/IAO_0020000 NIFDYS LOOM
http://purl.obolibrary.org/obo/IAO_0020000 OBIB LOOM
http://purl.obolibrary.org/obo/IAO_0020000 APOLLO-SV LOOM
http://purl.obolibrary.org/obo/IAO_0020000 AERO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 NIFSTD LOOM
http://purl.obolibrary.org/obo/IAO_0020000 TEO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 ICO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 OPTION-ONTOLOGY LOOM
http://purl.obolibrary.org/obo/IAO_0020000 GECKO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 IAO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 GEO LOOM
http://purl.obolibrary.org/obo/IAO_0020000 CHEMINF LOOM
http://purl.obolibrary.org/obo/IAO_0020000 AISM LOOM
http://semanticscience.org/resource/identifier MATERIALSMINE LOOM
http://purl.obolibrary.org/obo/WSIO_data_005 WSIO LOOM
http://purl.bioontology.org/ontology/HL7/C1554159 HL7 LOOM
http://www.ifomis.org/acgt/1.0#Identifier ACGT-MO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25364 NCIT LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25364 ROO LOOM
http://purl.obolibrary.org/obo/NCIT_C25364 ORNASEQ LOOM
http://www.co-ode.org/ontologies/ont.owl#Identifier CTO-NDD LOOM
http://purl.allotrope.org/ontologies/result#AFR_0000917 AFO LOOM
http://ecoinformatics.org/oboe/oboe.1.2/oboe-characteristics.owl#Identifier OBOE LOOM
http://semanticscience.org/resource/SIO_000115 HHEARP LOOM
http://semanticscience.org/resource/SIO_000115 SIO LOOM
http://semanticscience.org/resource/SIO_000115 CHEAR LOOM
http://semanticscience.org/resource/SIO_000115 BIOMO LOOM
http://semanticscience.org/resource/SIO_000115 SCO LOOM
http://semanticscience.org/resource/SIO_000115 HHEAR LOOM
http://semanticscience.org/resource/SIO_000115 GSSO LOOM
http://semanticscience.org/resource/SIO_000115 HASCO LOOM
http://purl.bioontology.org/ontology/LNC/LP6818-1 LOINC LOOM
http://purl.obolibrary.org/obo/sep_00006 SEP LOOM
http://www.ifomis.org/hdot/HDOT_CORE_033 VDOT LOOM