Genomic Feature and Variation Ontology

Last uploaded: October 14, 2016
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Preferred Name

Genome
Synonyms
Definitions

Representation of a genome. Genomic features that constitute the genome may be linked via one or more "Collection", "Catalog", "Contig", "Scaffold" or "File" instances. "Genome" can be used for describing data contents of the "genome-build" and "sequencing-scope" pragmas in GVF files.
ID

https://www.codamono.com/biointerchange/gfvo#Genome
comment

Representation of a genome. Genomic features that constitute the genome may be linked via one or more "Collection", "Catalog", "Contig", "Scaffold" or "File" instances. "Genome" can be used for describing data contents of the "genome-build" and "sequencing-scope" pragmas in GVF files.
isDefinedBy

http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41

http://samtools.github.io/hts-specs/VCFv4.2.pdf

http://sequenceontology.org/resources/gvf.html

http://samtools.github.io/hts-specs/VCFv4.1.pdf
label

Genome
prefixIRI

Genome
prefLabel

Genome
seeAlso

http://en.wikipedia.org/wiki/Genome
subClassOf

https://www.codamono.com/biointerchange/gfvo#BiologicalEntity
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http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16629 NCIT LOOM
http://purl.jp/bio/4/id/200906048213109935 IOBC LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G05.360.340 RH-MESH LOOM
http://jermontology.org/ontology/JERMOntology#Genome JERM LOOM
http://semanticscience.org/resource/SIO_000984 HASCO LOOM
http://semanticscience.org/resource/SIO_000984 HHEARP LOOM
http://semanticscience.org/resource/SIO_000984 SIO LOOM
http://semanticscience.org/resource/SIO_000984 CHEAR LOOM
http://semanticscience.org/resource/SIO_000984 BIOMO LOOM
http://semanticscience.org/resource/SIO_000984 SCO LOOM
http://semanticscience.org/resource/SIO_000984 HHEAR LOOM
http://semanticscience.org/resource/SIO_000984 POEM LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#5450 OCHV LOOM
http://purl.org/sig/ont/fma/fma84116 FMA LOOM
http://purl.org/obo/owl/sequence#genome PEO LOOM
http://purl.obolibrary.org/obo/NCIT_C16629 PREMEDONTO LOOM
http://www.semanticweb.org/wissame.laddada/ontologies/2020/9/SARS_CoV_2#Genome ONTOREPLICOV LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/18470003 SNOMEDCT LOOM
http://id.nlm.nih.gov/mesh/D016678 MDM LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Genome APAONTO LOOM
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#genome SNPO LOOM
http://purl.bioontology.org/ontology/MESH/D016678 MESH LOOM
http://purl.obolibrary.org/obo/OMIT_0017132 OMIT LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D016678 RH-MESH LOOM
http://rdf.biosemantics.org/ontologies/genomecomponents#Genome GCO LOOM
http://www.projecthalo.com/aura#Genome AURA LOOM
http://purl.obolibrary.org/obo/ECOSIMCONCEPT_Genome ECOSIM LOOM
http://purl.bioontology.org/ontology/HOIP/HOIP_0000332 HOIP LOOM
http://purl.org/obo/owlapi/fma#FMA_84116 BIOMODELS LOOM
http://purl.obolibrary.org/obo/MESH_D016678 BERO LOOM
http://doe-generated-ontology.com/OntoAD#C0017428 ONTOAD LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0017428 OCHV LOOM
http://purl.bioontology.org/ontology/CSP/1255-6250 CRISP LOOM
http://purl.org/biotop/biotop.owl#Genome BT LOOM
https://w3id.org/biolink/vocab/Genome BIOLINK LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 INBANCIDO LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 OVAE LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 OHPI LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 LIFO LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 VIO LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 OGG LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 CIDO LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 KTAO LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 OHMI LOOM
http://purl.obolibrary.org/obo/OGG_0000000001 OGG-MM LOOM
https://raw.githubusercontent.com/jbakkas/SARSMutOnto/main/SARSMutOnto.owl#genome SARSMUTONTO LOOM
http://purl.obolibrary.org/obo/FBcv_0003031 FB-CV LOOM
http://purl.obolibrary.org/obo/ODGI.owl#Genome OGDI LOOM
http://purl.obolibrary.org/obo/TXPO_0000332 TXPO LOOM
http://www.ebi.ac.uk/efo/EFO_0004420 CCONT LOOM
http://www.ebi.ac.uk/efo/EFO_0004420 EFO LOOM
http://www.ebi.ac.uk/efo/EFO_0004420 ORNASEQ LOOM
http://www.ebi.ac.uk/efo/EFO_0004420 EFO LOOM
http://purl.obolibrary.org/obo/SO_0001026 EUPATH LOOM
http://purl.obolibrary.org/obo/SO_0001026 SO LOOM
http://purl.obolibrary.org/obo/SO_0001026 SO LOOM
http://purl.obolibrary.org/obo/SO_0001026 NIFSTD LOOM
http://purl.obolibrary.org/obo/SO_0001026 KTAO LOOM
http://purl.obolibrary.org/obo/SO_0001026 GENEPIO LOOM
http://purl.obolibrary.org/obo/SO_0001026 GENO LOOM
http://purl.obolibrary.org/obo/SO_0001026 SLSO LOOM
http://purl.obolibrary.org/obo/SO_0001026 OGSF LOOM