Experimental Factor Ontology

Last uploaded: November 18, 2024
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Preferred Name

protocol
Synonyms

method used in an experiment

plan specification

method
Definitions

A protocol is an information entity which is a set of instructions that describe an how an experiment is done. a protocol is a plan specification which has sufficient level of detail and quantitative information to communicate it between domain experts, so that different domain experts will reliably be able to independently reproduce the process. A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process.
ID

http://purl.obolibrary.org/obo/OBI_0000272
branch_class

true
database_cross_reference

SNOMEDCT:260686004

NCIt:C42651

MO:214
definition

A protocol is an information entity which is a set of instructions that describe an how an experiment is done.

a protocol is a plan specification which has sufficient level of detail and quantitative information to communicate it between domain experts, so that different domain experts will reliably be able to independently reproduce the process.

A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process.
EFO_URI

http://www.ebi.ac.uk/efo/EFO_0001442
example of usage

PCR protocol, has objective specification, amplify DNA fragment of interest, and has action specification describes the amounts of experimental reagents used (e..g. buffers, dNTPS, enzyme), and the temperature and cycle time settings for running the PCR.
has curation status

http://purl.obolibrary.org/obo/IAO_0000122
has_exact_synonym

method used in an experiment

plan specification

method
IAO_0000111

protocol
IAO_0000119

OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)
label

protocol

protocol
OBI_0001847

study protocol
preferred label

protocol

protocol
prefixIRI

OBI:0000272
prefLabel

protocol

protocol
term editor

Tomasz Adamusiak

James Malone

PlanAndPlannedProcess Branch

Jie Zheng
subClassOf

http://purl.obolibrary.org/obo/IAO_0000030
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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/OBI_0000272 FOODON SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 ENM SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 PDRO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 PROCO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 EUPATH SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 CTO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 OBI SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 VICO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 PSDO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 VIVO-ISF SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 NDDO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 CCONT SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 CHEAR SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 NGBO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 OBCS SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 ONE SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 OPMI SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 RBO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 OBI_BCGO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 AGRO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 ONTODM-CORE SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 BMS-LM SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 BCO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 EGO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 ONTODM-KDD SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 HSO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 IBO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 ORNASEQ SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 OBIB SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 BERO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 SEPIO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 ONS SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 OLAM SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 HHEAR SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 STATO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 VIVO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 FLU SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 OBI_IEE SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 NGSONTO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 ICO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 KTAO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 ONSTR SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 DIDEO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 SLSO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 ERO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 VO SAME_URI
http://purl.obolibrary.org/obo/OBI_0000272 NIO SAME_URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Protocol OBOE LOOM
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Protocol SALMON LOOM
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#Protocol ECSO LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_11010 NIFSTD LOOM
http://mmisw.org/ont/Technology/ComputerNetworks/Protocol CN LOOM
http://www.icn.ch/icnp#Protocol ICNP LOOM
http://purl.org/ccf/Protocol CCF LOOM
http://purl.obolibrary.org/obo/OBI_0000272 FOODON LOOM
http://purl.obolibrary.org/obo/OBI_0000272 ENM LOOM
http://purl.obolibrary.org/obo/OBI_0000272 PDRO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 PROCO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 EUPATH LOOM
http://purl.obolibrary.org/obo/OBI_0000272 CTO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 OBI LOOM
http://purl.obolibrary.org/obo/OBI_0000272 VICO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 PSDO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 VIVO-ISF LOOM
http://purl.obolibrary.org/obo/OBI_0000272 NDDO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 CCONT LOOM
http://purl.obolibrary.org/obo/OBI_0000272 CHEAR LOOM
http://purl.obolibrary.org/obo/OBI_0000272 NGBO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 OBCS LOOM
http://purl.obolibrary.org/obo/OBI_0000272 ONE LOOM
http://purl.obolibrary.org/obo/OBI_0000272 OPMI LOOM
http://purl.obolibrary.org/obo/OBI_0000272 RBO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 OBI_BCGO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 AGRO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 ONTODM-CORE LOOM
http://purl.obolibrary.org/obo/OBI_0000272 BMS-LM LOOM
http://purl.obolibrary.org/obo/OBI_0000272 BCO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 EGO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 ONTODM-KDD LOOM
http://purl.obolibrary.org/obo/OBI_0000272 HSO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 ORNASEQ LOOM
http://purl.obolibrary.org/obo/OBI_0000272 OBIB LOOM
http://purl.obolibrary.org/obo/OBI_0000272 BERO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 SEPIO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 ONS LOOM
http://purl.obolibrary.org/obo/OBI_0000272 OLAM LOOM
http://purl.obolibrary.org/obo/OBI_0000272 HHEAR LOOM
http://purl.obolibrary.org/obo/OBI_0000272 STATO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 VIVO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 FLU LOOM
http://purl.obolibrary.org/obo/OBI_0000272 OBI_IEE LOOM
http://purl.obolibrary.org/obo/OBI_0000272 NGSONTO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 ICO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 KTAO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 ONSTR LOOM
http://purl.obolibrary.org/obo/OBI_0000272 DIDEO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 SLSO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 ERO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 VO LOOM
http://purl.obolibrary.org/obo/OBI_0000272 NIO LOOM
http://jermontology.org/ontology/JERMOntology#Protocol JERM LOOM
http://www.limics.fr/ontologies/menelastop#protocol TOP-MENELAS LOOM
http://purl.jp/bio/4/id/200906042645513216 IOBC LOOM
http://www.co-ode.org/ontologies/galen#Protocol GALEN LOOM
http://www.ifomis.org/acgt/1.0#Protocol ACGT-MO LOOM
http://mged.sourceforge.net/ontologies/MGEDOntology.owl#Protocol MO LOOM
http://chem.deri.ie/granatum#Protocol CANCO LOOM
http://epoch.stanford.edu/ProtocolOntology.owl#Protocol CTONT LOOM
http://www.limics.fr/ontologies/menelastop/protocol ONTOPSYCHIA LOOM
http://scai.fraunhofer.de/CSEO#Protocol CSEO LOOM
http://neurolog.unice.fr/ontoneurolog/v3.0/ontoneurolog-extension-of-dolce.owl#protocol ONL-MSA LOOM
http://neurolog.unice.fr/ontoneurolog/v3.0/ontoneurolog-extension-of-dolce.owl#protocol OntoVIP LOOM
http://neurolog.unice.fr/ontoneurolog/v3.0/ontoneurolog-extension-of-dolce.owl#protocol ONL-MR-DA LOOM
http://neurolog.unice.fr/ontoneurolog/v3.0/ontoneurolog-extension-of-dolce.owl#protocol ONL-DP LOOM
http://clinicaltrials.gov/ctgo#Protocol CTGO LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_11010 BIRNLEX LOOM
http://chemoonto.owl#Protocol CHO LOOM
http://ontologies.dbmi.pitt.edu/edda/PublicationType.owl#protocol EDDA_PT LOOM
http://purl.bioontology.org/ontology/LNC/LA17190-2 LOINC LOOM
https://contsys.org/concept/protocol CONTSONTO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C42651 NCIT LOOM
http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#Protocol OBOE-SBC LOOM
http://purl.obolibrary.org/obo/sep_00101 SEP LOOM
http://www.CareLex.org/2012/carelex.owl#Protocol CARELEX LOOM
https://w3id.org/reproduceme#Protocol REPRODUCE-ME LOOM
http://edamontology.org/data_2531 EDAM LOOM
http://edamontology.org/data_2531 ITO LOOM
http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_4916000 NEMO LOOM