Cell Line Ontology

Last uploaded: March 21, 2022
Preferred Name

neural nucleus

Synonyms

nervous system nucleus

neuraxis nucleus

neuronal nucleus

nucleus of CNS

nucleus

nucleus of neuraxis

Definitions

A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO).

ID

http://purl.obolibrary.org/obo/UBERON_0000125

database_cross_reference

http://en.wikipedia.org/wiki/Nucleus_(neuroanatomy)

NCIT:C13197

AEO:0000136

FMA:83686

NLX:28443

external_definition

Anatomical structure consisting of a discrete aggregate of neuronal soma[GO][GO_REF:0000021].

external_ontology_notes

Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in 'subcortical' because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in 'relatively compact' and 'distiguishable by histology' because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate.

has_broad_synonym

nucleus

has_exact_synonym

nervous system nucleus

neuraxis nucleus

neuronal nucleus

nucleus of CNS

has_obo_namespace

uberon

has_related_synonym

nucleus of neuraxis

id

UBERON:0000125

imported from

http://purl.obolibrary.org/obo/uberon.owl

in_subset

http://purl.oboInOwllibrary.org/oboInOwl/uberon/core#cumbo

label

neural nucleus

notation

UBERON:0000125

prefLabel

neural nucleus

textual definition

A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO).

subClassOf

http://purl.obolibrary.org/obo/UBERON_0011215

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0000125 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 UBERON SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 PATO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 XPO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 CL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 NPOKB SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 OAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 RBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 OHPI SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 FOVT SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 PCL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 NIFDYS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 EPIO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 BERO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 NBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 HHEAR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 UPHENO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 OCVDAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 KTAO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 MAXO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 CCF SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 ENVO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 FNS-H SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 AISM SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 NMDCO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0000125 GO-PLUS LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 UBERON LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 PATO LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 OBA LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 CL LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 XPO LOOM
http://purl.obolibrary.org/obo/XAO_0004609 XPO LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 NPOKB LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 OAE LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 RBO LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 OHPI LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 FOVT LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 PCL LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 NIFDYS LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 EPIO LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 NBO LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 HHEAR LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 UPHENO LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 OCVDAE LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 KTAO LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 MAXO LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 CCF LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 ENVO LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 FNS-H LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 AISM LOOM
http://purl.obolibrary.org/obo/UBERON_0000125 NMDCO LOOM
http://purl.obolibrary.org/obo/XAO_0004609 UPHENO LOOM
http://purl.obolibrary.org/obo/XAO_0004609 XAO LOOM

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