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Metrics

Number of classes:	41780
Number of individuals:	22
Number of properties:	75
Maximum depth:	24
Maximum number of children:	21698
Average number of children:	16
Classes with a single child:	1257
Classes with more than 25 children:	66
Classes with no definition:	8608

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Details

Acronym	CLO
Visibility	Public
BioPortal PURL	http://purl.bioontology.org/ontology/CLO
Description	The Cell Line Ontology (CLO) is a community-based ontology in domain of biological cell lines with a focus on permanent cell lines from culture collections. Upper ontology structures that frame the skeleton of CLO include Basic Formal Ontology and Relation Ontology. Cell lines contained in CLO are associated with terms from other ontologies such as Cell Type Ontology, NCBI Taxonomy, and Ontology for Biomedical Investigation. A common design pattern for the cell line is used to model cell lines and their attributes, the Jurkat cell line provides ane xample. Currently CLO contains over 36,000 cell line entries obtained from ATCC, HyperCLDB, Coriell, and bymanual curation. The cell lines are derived from 194 cell types, 656 anatomical entries, and 217 organisms. The OWL-based CLO is machine-readable and can be used in various applications.
Status	Production
Format	OWL
Contact	Oliver He, yongqunh@med.umich.edu Sirarat Sarntivijai, siiraa@umich.edu
Home Page	http://www.clo-ontology.org/
Publications Page	http://www.jbiomedsem.com/content/5/1/37
Documentation Page	https://code.google.com/p/clo-ontology/
Categories	All Organisms, Anatomy, Biological Process, Biomedical Resources, Cell, Experimental Conditions, Phenotype, Taxonomic Classification, Vocabularies
Groups

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Submissions

Submission	Release Date	Upload Date	Downloads
2.1.106 (Parsed, Indexed, Metrics, Annotator)	05/31/2017	05/31/2017	OWL \| CSV \| RDF/XML \| Diff
2.1.104 (Archived)	05/30/2017	05/30/2017	OWL \| Diff
2.1.99 (Archived)	05/23/2017	05/23/2017	OWL \| Diff
2.1.98 (Archived)	05/21/2017	05/21/2017	OWL \| Diff
2.1.91 (Archived)	04/21/2017	04/21/2017	OWL \| Diff
2.1.90 (Archived)	02/06/2017	02/06/2017	OWL \| Diff
2.1.83 (Archived)	08/31/2016	08/31/2016	OWL \| Diff
2.1.83 (Archived)	07/07/2016	07/07/2016	OWL \| Diff
2.1.79 (Archived)	05/04/2016	05/04/2016	OWL \| Diff
2.1.76 (Archived)	04/30/2016	04/30/2016	OWL \| Diff
2.1.67 (Archived)	04/27/2016	04/27/2016	OWL \| Diff
2.1.66 (Archived)	04/25/2016	04/25/2016	OWL \| Diff
2.1.65 (Archived)	04/22/2016	04/22/2016	OWL \| Diff
2.1.64 (Archived)	04/21/2016	04/21/2016	OWL \| Diff
2.1.63 (Archived)	10/13/2015	10/13/2015	OWL \| Diff
2.1.63 (Archived)	08/20/2015	08/20/2015	OWL \| Diff
2.1.64 (Archived)	08/19/2015	04/25/2015	OWL \| Diff
2.1.59 (Archived)	11/06/2013	02/21/2014	OWL \| Diff
2.1.59 (Archived)	11/06/2013	02/21/2014	OWL \| Diff
2.1.59 (Archived)	11/06/2013	02/20/2014	OWL
2.1.59 (Archived)	11/06/2013	02/20/2014	OWL
2.1.52 (Archived)	11/06/2013	11/06/2013	OWL \| Diff
2.1.52 (Archived)	10/21/2013	10/21/2013	OWL \| Diff
2.1.52 (Archived)	10/21/2013	10/21/2013	OWL \| Diff
2.1.52 (Archived)	10/10/2013	10/10/2013	OWL
2.1.52 (Archived)	08/05/2013	08/05/2013	OWL
2.1.52 (Archived)	07/04/2013	07/04/2013	OWL
2.1.46 (Archived)	06/19/2013	06/19/2013	OWL
2.1.44 (Archived)	06/18/2013	06/18/2013	OWL
2.1.43 (Archived)	06/16/2013	06/16/2013	OWL
2.1.42 (Archived)	06/13/2013	06/13/2013	OWL
2.1.38 (Archived)	06/12/2013	06/12/2013	OWL
2.1.33 (Archived)	06/04/2013	06/04/2013	OWL
2.1.32 (Archived)	05/23/2013	05/23/2013	OWL
2.1.30 (Archived)	05/06/2013	05/06/2013	OWL
2.1.29 (Archived)	04/26/2013	04/26/2013	OWL
2.1.28 (Archived)	04/07/2013	04/26/2013	OWL
2.1.28 (Archived)	04/07/2013	04/07/2013	OWL
unknown (Archived)	04/06/2013	04/06/2013	OWL
2.1.28 (Archived)	03/29/2013	03/29/2013	OWL
2.1.25 (Archived)	03/28/2013	03/28/2013	OWL
2.1.24 (Archived)	03/27/2013	03/27/2013	OWL
2.1.22 (Archived)	03/22/2013	03/22/2013	OWL
2.1.19 (Archived)	03/15/2013	03/15/2013	OWL
2.1.05 (Archived)	02/26/2013	02/26/2013	OWL
2.1.03 (Archived)	01/11/2013	01/11/2013	OWL
2.1.03 (Archived)	01/10/2013	01/10/2013	OWL
2.1.04 (Archived)	11/16/2012	11/16/2012	OWL
unknown (Archived)	11/15/2012	11/15/2012	OWL
2.1.04 (Archived)	09/20/2012	09/20/2012	OWL
2.1.03 (Archived)	09/20/2012	09/20/2012	OWL
2.0.36 (Archived)	09/20/2012	09/20/2012	OWL
2.0.36 (Archived)	07/13/2012	07/23/2012	OWL
2.0.36 (Archived)	07/13/2012	07/19/2012	OWL
2.0.36 (Archived)	07/13/2012	07/13/2012	OWL
2.0.35 (Archived)	07/13/2012	07/13/2012	OWL
2.0.35 (Archived)	07/13/2012	07/12/2012	OWL
2.0.27 (Archived)	03/10/2011	03/10/2011	OWL
2.0.26 (Archived)	03/09/2011	03/10/2011	OWL
1 (Archived)	02/29/2008	07/08/2009	OWL
more...

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Projects Using This Ontology Create new project

Project	Description	People	Institution
Beta Cell Genomics database	Beta cell genomics database provides searches and tools to... Beta cell genomics database provides searches and tools to explore detailed information about genes, transcripts, gene interactions, genomic regions, and beta cell related functional genomics studies.	Beta Cell Biology Consortium Beta Cell Biology Consortium	University of Pennsylvania
BioAssay Express	BioAssay Express allows to explore the similarity of assays... BioAssay Express allows to explore the similarity of assays within and between organizations. browse and group assays based upon meaningful, detailed criteria like cell type, target, readouts, assay kit, etc., identify similar assays both early on for assay validation and later on for greater confidence in SAR (structure activity relationship). Common Assay Template, which draws from a number of underlying vocabularies created by domain experts, including the BioAssay Ontology (BAO), Drug Target Ontology (DTO), Cell Line Ontology (CLO) and others.	Alex M. Clark, Nadia K. Litterman, Janice E. Kranz, Peter Gund, Kellan Gregory, Barry A. Bunin Alex M. Clark, Nadia K. Litterman, Janice E. Kranz, Peter Gund, Kellan Gregory, Barry A. Bunin	Collaborative Drug Discovery
ISA software suite	An open source ISA software suite and an extensible... An open source ISA software suite and an extensible hierarchical data structure implemented by a growing number of international public resources. It caters to data as diverse as stem cell, toxicogenomics, environmental gene surveys, microbial diversity studies, and a variety of metabolomics and metagenomics-based studies. But it maintains cross-domain compatibility in the way the experimental context is described.	International collaborative effort International collaborative effort	Multiple institutions; leads at University of Oxford, UK

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