Biological Pathway Taxonomy

Last uploaded: March 30, 2022
Preferred Name

Medulloblastoma

Synonyms

Organ_System: nervous system

PathwayType: signaling

CellType: cancer cell

CellType: neural stem cell

Organ: brain

PMID: 20581434

PMID: 20414201

Tissue: nerve tissue

PMID: 16290230

PMID: 22430388

NodeType: Pathway

PMID: 18676356

Pathway_Author: S. Sozin www.researchgate.net/profile/Sergey-Sozin

Notes: Headnote: Medulloblastoma is a tumor that arises from stem and/or progenitor cells of the cerebellum and is the most common brain tumor affecting children. Signaling description: The central pathways involved in medulloblastoma pathogenesis are Sonic hedgehog homolog (SHH), WNT, Notch, ERBB, BMP, and IGF/PI3K signaling. In the SHH pathway, binding of SHH to its receptor (PTCH1) relieves inhibition on the downstream effector SMO and allows the release of GLI from inhibitory protein, SUFU. Inactivating mutations of PTCH1 and SUFU and/or activating mutations of SMO have been found in 15-30% of sporadic medulloblastomas. Additionally, germline mutations in PTCH1 cause Gorlin syndrome (basal cell nevus syndrome). Further, in WNT pathway, WNT3A ligand binds to its receptor (FZD) leading to the release of its downstream effector beta-catenin (CTNNB1) from an inhibitory complex that includes APC and AXIN1/2 proteins. Subsequent nuclear accumulation of CTNNB1 is thought to mediate its tumorigenic functions through the activation of TCF7/LEF1 transcription factors. Approximately 20% of sporadic medulloblastomas have mutations in APC, AXIN1/2, or CTNNB1. APC mutations are found in Turcot syndrome, which has a predisposition to medulloblastoma development. In addition, TP53 may be silenced due to mutations in medulloblastoma. TP53 mutations are typical for Li-Fraumeni syndrome, which has a high incidence of medulloblastoma development. Furthermore, Notch1/2/3 are overexpressed in a subset of medulloblastomas. Also, ERBB is important in regulating the development of the neuronal tissue. ERBB2 and ERBB4 are overexpressed in medulloblastoma and are able to activate the PI3K/AKT1 signaling. ERBB2 is overexpressed in 28% of medulloblastoma cases. Additionally, deletion mutants of ERBB4 have been found in childhood medulloblastomas. The IGF system also plays an important role in neuronal development and is involved in the development of brain tumors. Most medulloblastomas overexpress IGF1, IGF2, and IGF1R proteins. Outcome effects: The downstream targets of SHH are BMI1, CCND1/2, SOX2, NANOG, and others. Further, TCF7/LEF1 transcription factors activate MYC, OTX2, REST, and SOX4/11 target genes, which have established roles in cellular proliferation, block of differentiation, and inhibition of apoptosis (MYC, MYCN, and MNT may be overexpressed in medulloblastoma due to activating mutations/amplifications). Also, the up-regulation of Notch signaling activates the HES1/5 transcription factors, which negatively regulate the differentiation of neural progenitor cells. The, ERBB2 is thought to promote tumorigenesis by promoting the expression of pro-metastatic genes such as S100A4 and CCL5. Highlighted proteins: Proteins with increased expression or activity are highlighted in red, and proteins with decreased expression or activity are highlighted in blue. Mutated genes: Mutated genes are shown in white-out style.

PMID: 21243257

Description: Medulloblastoma arises from stem and/or progenitor cells of the cerebellum and is the most common brain tumor affecting children. Pathway is built manually using published studies.

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-f116e34c-a226-42f4-84de-37e046996ead

PMID: 22134537

Source: Diseases

ID

urn:agi-pathway:uuid-f116e34c-a226-42f4-84de-37e046996ead

database_cross_reference

PS:PathwayType

PS:Description

PS:Tissue

PS:Pathway_Author

PS:Link

PS:CellType

PS:Organ_System

PS:PMID

PS:NodeType

PS:Notes

PS:Organ

PS:Source

has_exact_synonym

Organ_System: nervous system

PathwayType: signaling

CellType: cancer cell

CellType: neural stem cell

Organ: brain

PMID: 20581434

PMID: 20414201

Tissue: nerve tissue

PMID: 16290230

PMID: 22430388

NodeType: Pathway

PMID: 18676356

Pathway_Author: S. Sozin www.researchgate.net/profile/Sergey-Sozin

Notes: Headnote: Medulloblastoma is a tumor that arises from stem and/or progenitor cells of the cerebellum and is the most common brain tumor affecting children. Signaling description: The central pathways involved in medulloblastoma pathogenesis are Sonic hedgehog homolog (SHH), WNT, Notch, ERBB, BMP, and IGF/PI3K signaling. In the SHH pathway, binding of SHH to its receptor (PTCH1) relieves inhibition on the downstream effector SMO and allows the release of GLI from inhibitory protein, SUFU. Inactivating mutations of PTCH1 and SUFU and/or activating mutations of SMO have been found in 15-30% of sporadic medulloblastomas. Additionally, germline mutations in PTCH1 cause Gorlin syndrome (basal cell nevus syndrome). Further, in WNT pathway, WNT3A ligand binds to its receptor (FZD) leading to the release of its downstream effector beta-catenin (CTNNB1) from an inhibitory complex that includes APC and AXIN1/2 proteins. Subsequent nuclear accumulation of CTNNB1 is thought to mediate its tumorigenic functions through the activation of TCF7/LEF1 transcription factors. Approximately 20% of sporadic medulloblastomas have mutations in APC, AXIN1/2, or CTNNB1. APC mutations are found in Turcot syndrome, which has a predisposition to medulloblastoma development. In addition, TP53 may be silenced due to mutations in medulloblastoma. TP53 mutations are typical for Li-Fraumeni syndrome, which has a high incidence of medulloblastoma development. Furthermore, Notch1/2/3 are overexpressed in a subset of medulloblastomas. Also, ERBB is important in regulating the development of the neuronal tissue. ERBB2 and ERBB4 are overexpressed in medulloblastoma and are able to activate the PI3K/AKT1 signaling. ERBB2 is overexpressed in 28% of medulloblastoma cases. Additionally, deletion mutants of ERBB4 have been found in childhood medulloblastomas. The IGF system also plays an important role in neuronal development and is involved in the development of brain tumors. Most medulloblastomas overexpress IGF1, IGF2, and IGF1R proteins. Outcome effects: The downstream targets of SHH are BMI1, CCND1/2, SOX2, NANOG, and others. Further, TCF7/LEF1 transcription factors activate MYC, OTX2, REST, and SOX4/11 target genes, which have established roles in cellular proliferation, block of differentiation, and inhibition of apoptosis (MYC, MYCN, and MNT may be overexpressed in medulloblastoma due to activating mutations/amplifications). Also, the up-regulation of Notch signaling activates the HES1/5 transcription factors, which negatively regulate the differentiation of neural progenitor cells. The, ERBB2 is thought to promote tumorigenesis by promoting the expression of pro-metastatic genes such as S100A4 and CCL5. Highlighted proteins: Proteins with increased expression or activity are highlighted in red, and proteins with decreased expression or activity are highlighted in blue. Mutated genes: Mutated genes are shown in white-out style.

PMID: 21243257

Description: Medulloblastoma arises from stem and/or progenitor cells of the cerebellum and is the most common brain tumor affecting children. Pathway is built manually using published studies.

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-f116e34c-a226-42f4-84de-37e046996ead

PMID: 22134537

Source: Diseases

id

urn:agi-pathway:uuid-f116e34c-a226-42f4-84de-37e046996ead

label

Medulloblastoma

notation

uuid-f116e34c-a226-42f4-84de-37e046996ead

prefLabel

Medulloblastoma

treeView

urn:agi-folder:nerve_tissue

urn:agi-folder:m

urn:agi-folder:nervous_system

urn:agi-folder:medulloblastoma

subClassOf

urn:agi-folder:nerve_tissue

urn:agi-folder:m

urn:agi-folder:nervous_system

urn:agi-folder:medulloblastoma

Delete Subject Author Type Created
No notes to display
Create mapping

Delete Mapping To Ontology Source
http://www.ebi.ac.uk/efo/EFO_0002939 EFO LOOM
http://purl.obolibrary.org/obo/MONDO_0007959 MONDO LOOM
http://purl.obolibrary.org/obo/MONDO_0007959 OBA LOOM
http://purl.obolibrary.org/obo/DOID_0050902 RBO LOOM
http://purl.obolibrary.org/obo/DOID_0050902 DOID LOOM
http://nanbyodata.jp/ontology/NANDO_2200090 NANDO LOOM
http://www.orpha.net/ORDO/Orphanet_616 ORDO LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_12626 BIRNLEX LOOM
http://purl.obolibrary.org/obo/NCIT_C3222 BERO LOOM
http://radlex.org/RID/RID4408 RADLEX LOOM
http://purl.bioontology.org/ontology/OMIM/155255 OMIM LOOM
http://purl.bioontology.org/ontology/OMIM/MTHU008963 OMIM LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0025149 OCHV LOOM
http://purl.obolibrary.org/obo/OMIT_0009593 OMIT LOOM
http://purl.obolibrary.org/obo/HP_0002885 HP LOOM
http://purl.obolibrary.org/obo/HP_0002885 UPHENO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Medulloblastoma CSEO LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#7877 OCHV LOOM
http://www.owl-ontologies.com/Ontology1358660052.owl#Medulloblastoma PEDTERM LOOM
http://www.semanticweb.org/ontologies/2012/11/abnormalities.owl#phenodb:2404 IFAR LOOM
http://purl.bioontology.org/ontology/MEDDRA/10027107 MEDDRA LOOM
http://purl.obolibrary.org/obo/DOID_0050902 DTO LOOM
http://purl.obolibrary.org/obo/DOID_0050902 BAO LOOM
http://purl.obolibrary.org/obo/DOID_0050902 HHEAR LOOM
http://purl.obolibrary.org/obo/DOID_0050902 NIFSTD LOOM
http://purl.obolibrary.org/obo/DOID_0050902 MIDO LOOM
http://purl.obolibrary.org/obo/DOID_0050902 FNS-H LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_12626 NIFDYS LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_12626 NIFSTD LOOM
http://purl.bioontology.org/ontology/CSP/2006-5547 CRISP LOOM
http://www.limics.org/hrdo/rdfns#pat_id_3751 HRDO LOOM
http://identifiers.org/omim/155255 REXO LOOM
http://identifiers.org/omim/155255 GEXO LOOM
http://identifiers.org/omim/155255 RETO LOOM
http://purl.obolibrary.org/obo/MONDO_0007959 DOVES LOOM
http://scai.fraunhofer.de/CSEO#Medulloblastoma CSEO LOOM
http://www.phoc.org.cn/pmo/class/PMO_00085555 PMAPP-PMO LOOM
http://www.owl-ontologies.com/NPOntology.owl#DOID_3858 NATPRO LOOM
http://www.limics.org/hrdo/rdfns#sgn_id_50960 HRDO LOOM
http://purl.obolibrary.org/obo/OMIM_155255 CCO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3222 NCIT LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.557.465.625.600.380.515 RH-MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.557.470.670.590.500 RH-MESH LOOM
http://localhost/plosthes.2017-1#7033 PLOSTHES LOOM
http://purl.bioontology.org/ontology/MESH/D008527 MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.557.580.625.600.590.500 RH-MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.557.465.625.600.590.500 RH-MESH LOOM
http://purl.bioontology.org/ontology/RCD/Xa999 RCD LOOM
http://purl.obolibrary.org/obo/MPATH_250 MPATH LOOM
http://purl.obolibrary.org/obo/MPATH_250 UPHENO LOOM
http://purl.obolibrary.org/obo/MPATH_250 ZP LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/1156923005 SNOMEDCT LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/443333004 SNOMEDCT LOOM
http://purl.jp/bio/4/id/200906067389872435 IOBC LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.557.580.625.600.380.515 RH-MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D008527 RH-MESH LOOM
http://www.gamuts.net/entity#medulloblastoma GAMUTS LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.557.470.670.380.515 RH-MESH LOOM