Human Interaction Network Ontology

Last uploaded: June 27, 2014
Preferred Name

DNA Repair

Synonyms
Definitions

Authored: Hoeijmakers, JH, Lees-Miller, S, Thompson, L, Gopinathrao, G, Matthews, L, Schultz, R, Pegg, A, 2003-07-10 00:12:38 Reviewed: Khanna, KK, Lindahl, T, West, SC, Wood, RD, 0000-00-00 00:00:00 DNA repair is a phenomenal multi-enzyme, multi-pathway system required to ensure the integrity of the cellular genome. These cellular mechanisms that must cope with the plethora of DNA base pair adducts that arise.<p>DNA damage can arise spontaneously in the cellular milieu through chemical alteration of base nucleotides or as a consequence of errors during DNA replication. For example, it is well known that normal cellular pH and temperature offer an environment, which is hostile to the integrity of DNA and its nucleotide components. Additionally, DNA damage may be induced in response to environmental exposures, including exposure to physical agents such as ionizing or ultraviolet (UV) radiation. Finally, specific chemical agents are known to alkylate or cross-link DNA bases, produce bulky adducts on DNA bases, or break DNA phosphate-sugar backbone.<p>The pioneering work from a number of laboratories have elucidated the basic mechanisms underlying distinct DNA repair pathways that include nucleotide excision repair (NER), base excision repair (BER), DNA strand break repair (DSBR), direct reversal of DNA damage, and the replication past DNA lesions by specialized DNA bypass polymerases (bypass replication). Defects in most of these repair pathways have been associated with one or more specific human diseases. Additionally, the repair of damaged DNA is intimately associated with a number of other distinct cellular processes such as DNA replication, DNA recombination, cell cycle checkpoint arrest, and other basic cellular mechanisms as outlined herein. Edited: Matthews, L, Gopinathrao, G, 0000-00-00 00:00:00

ID

http://purl.obolibrary.org/obo/HINO_0016411

comment

Authored: Hoeijmakers, JH, Lees-Miller, S, Thompson, L, Gopinathrao, G, Matthews, L, Schultz, R, Pegg, A, 2003-07-10 00:12:38

Reviewed: Khanna, KK, Lindahl, T, West, SC, Wood, RD, 0000-00-00 00:00:00

DNA repair is a phenomenal multi-enzyme, multi-pathway system required to ensure the integrity of the cellular genome. These cellular mechanisms that must cope with the plethora of DNA base pair adducts that arise.

DNA damage can arise spontaneously in the cellular milieu through chemical alteration of base nucleotides or as a consequence of errors during DNA replication. For example, it is well known that normal cellular pH and temperature offer an environment, which is hostile to the integrity of DNA and its nucleotide components. Additionally, DNA damage may be induced in response to environmental exposures, including exposure to physical agents such as ionizing or ultraviolet (UV) radiation. Finally, specific chemical agents are known to alkylate or cross-link DNA bases, produce bulky adducts on DNA bases, or break DNA phosphate-sugar backbone.

The pioneering work from a number of laboratories have elucidated the basic mechanisms underlying distinct DNA repair pathways that include nucleotide excision repair (NER), base excision repair (BER), DNA strand break repair (DSBR), direct reversal of DNA damage, and the replication past DNA lesions by specialized DNA bypass polymerases (bypass replication). Defects in most of these repair pathways have been associated with one or more specific human diseases. Additionally, the repair of damaged DNA is intimately associated with a number of other distinct cellular processes such as DNA replication, DNA recombination, cell cycle checkpoint arrest, and other basic cellular mechanisms as outlined herein.

Edited: Matthews, L, Gopinathrao, G, 0000-00-00 00:00:00

definition source

Reactome, http://www.reactome.org

label

DNA Repair

located_in

http://purl.obolibrary.org/obo/NCBITaxon_9606

prefixIRI

HINO:0016411

prefLabel

DNA Repair

seeAlso

ReactomeREACT_216

GENE ONTOLOGYGO:0006281

Reactome Database ID Release 4373894

subClassOf

http://purl.obolibrary.org/obo/INO_0000021

has_part

http://purl.obolibrary.org/obo/HINO_0016447

http://purl.obolibrary.org/obo/HINO_0016741

http://purl.obolibrary.org/obo/HINO_0016457

http://purl.obolibrary.org/obo/HINO_0016689

http://purl.obolibrary.org/obo/HINO_0016439

http://purl.obolibrary.org/obo/HINO_0016413

Delete Subject Author Type Created
No notes to display
Create mapping

Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/GO_0006281 OBA LOOM
http://purl.obolibrary.org/obo/GO_0006281 FYPO LOOM
http://purl.obolibrary.org/obo/GO_0006281 RBO LOOM
http://purl.obolibrary.org/obo/NCIT_C16513 BERO LOOM
http://purl.obolibrary.org/obo/IEV_0000872 PTS LOOM
http://www.phoc.org.cn/pmo/class/PMO_00057351 PMAPP-PMO LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0012899 OCHV LOOM
http://purl.bioontology.org/ontology/MESH/D004260 MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.149.115.219 RH-MESH LOOM
http://purl.bioontology.org/ontology/CSP/2102-8256 CRISP LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16513 NCIT LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G02.111.087.219 RH-MESH LOOM
http://purl.org/obo/owl/GO#GO_0006281 BIOMODELS LOOM
http://purl.jp/bio/4/id/200906046713972181 IOBC LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/65113001 SNOMEDCT LOOM
http://purl.obolibrary.org/obo/GMM_28.2 GMM LOOM
http://purl.obolibrary.org/obo/GO_0006281 NIGO LOOM
http://purl.obolibrary.org/obo/GO_0006281 GO-EXT LOOM
http://purl.obolibrary.org/obo/GO_0006281 HOIP LOOM
http://purl.obolibrary.org/obo/GO_0006281 EFO LOOM
http://purl.obolibrary.org/obo/GO_0006281 PHAGE LOOM
http://purl.obolibrary.org/obo/GO_0006281 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0006281 BAO LOOM
http://purl.obolibrary.org/obo/GO_0006281 DPO LOOM
http://purl.obolibrary.org/obo/GO_0006281 BERO LOOM
http://purl.obolibrary.org/obo/GO_0006281 TXPO LOOM
http://purl.obolibrary.org/obo/GO_0006281 UPHENO LOOM
http://purl.obolibrary.org/obo/GO_0006281 FTC LOOM
http://purl.obolibrary.org/obo/GO_0006281 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0006281 KTAO LOOM
http://purl.obolibrary.org/obo/GO_0006281 REGN_GO LOOM
http://purl.obolibrary.org/obo/GO_0006281 GO LOOM
http://purl.obolibrary.org/obo/GO_0006281 ZP LOOM
http://localhost/plosthes.2017-1#5436 PLOSTHES LOOM
http://purl.obolibrary.org/obo/OMIT_0005517 OMIT LOOM
http://purl.obolibrary.org/obo/MESH_D004260 BERO LOOM
http://www.projecthalo.com/aura#DNA-Repair AURA LOOM
urn:agi-folder:dna_repair BPT LOOM
http://purl.bioontology.org/ontology/SNMI/F-E2660 SNMI LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D004260 RH-MESH LOOM
http://doe-generated-ontology.com/OntoAD#C0012899 ONTOAD LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G05.355.195 RH-MESH LOOM