Biolink Model

Last uploaded: April 13, 2024

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Preferred Name	small molecule
Synonyms	chemical substance
Definitions	A small molecule entity is a molecular entity characterized by availability in small-molecule databases of SMILES, InChI, IUPAC, or other unambiguous representation of its precise chemical structure; for convenience of representation, any valid chemical representation is included, even if it is not strictly molecular (e.g., sodium ion).
ID	https://w3id.org/biolink/vocab/SmallMolecule
altLabel	chemical substance
definition	A small molecule entity is a molecular entity characterized by availability in small-molecule databases of SMILES, InChI, IUPAC, or other unambiguous representation of its precise chemical structure; for convenience of representation, any valid chemical representation is included, even if it is not strictly molecular (e.g., sodium ion).
inScheme	https://w3id.org/biolink/biolink-model
label	small molecule
narrowMatch	http://purl.obolibrary.org/obo/CHEBI_59999 http://purl.bioontology.org/ontology/STY/T127 http://purl.bioontology.org/ontology/STY/T125 http://purl.bioontology.org/ontology/STY/T124 http://purl.bioontology.org/ontology/STY/T111 http://purl.bioontology.org/ontology/STY/T119 http://purl.bioontology.org/ontology/STY/T110 http://purl.bioontology.org/ontology/STY/T115 http://purl.bioontology.org/ontology/STY/T118 http://purl.bioontology.org/ontology/STY/T196 http://purl.bioontology.org/ontology/STY/T197 https://bioschemas.org/ChemicalSubstance http://purl.bioontology.org/ontology/STY/T109
prefixIRI	biolink:SmallMolecule
prefLabel	small molecule
subClassOf	https://w3id.org/biolink/vocab/MolecularEntity

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Mapping To	Ontology	Source
https://w3id.org/chemrof/SmallMolecule	CHEMROF	LOOM
http://purl.obolibrary.org/obo/MS_1003035	MS	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C48809	NCIT	LOOM
http://lsdis.cs.uga.edu/projects/glycomics/propreo#small_molecule	PROPREO	LOOM
http://regenbase.org/ontology#RB_0000125	RB	LOOM
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule	MIM	LOOM
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule	DIKB	LOOM
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule	BP	LOOM
http://www.bioassayontology.org/bao#BAO_0000176	BAO	LOOM
http://www.semanticweb.org/BiPON/BiPON_00000040	BIPON	LOOM
http://purl.jp/bio/4/id/200906048748154930	IOBC	LOOM
http://hadatac.org/ont/chear#SmallMolecule	CHEAR	LOOM
http://purl.bioontology.org/ontology/CSP/5004-0075	CRISP	LOOM
http://purl.obolibrary.org/obo/INO_0000132	INO	LOOM
http://purl.obolibrary.org/obo/INO_0000132	HINO	LOOM
http://bioontology.org/ontologies/Activity.owl#Small_Molecule	REGN_BRO	LOOM
http://bioontology.org/ontologies/Activity.owl#Small_Molecule	BRO	LOOM
http://bioontology.org/ontologies/Activity.owl#Small_Molecule	BRO_ACRONYM	LOOM
http://purl.obolibrary.org/obo/MI_0328	MI	LOOM
http://purl.org/twc/HHEAR_00302	HHEAR	LOOM
http://purl.obolibrary.org/obo/VariO_0263	VARIO	LOOM