Combined Phenotype Ontology

Last uploaded: November 18, 2021
Preferred Name

optic tract

Synonyms

optic tracts

visual pathway

tractus opticus

tractus optici

optic lemniscus

Definitions

Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF].

ID

http://purl.obolibrary.org/obo/UBERON_0001908

connected to

http://purl.obolibrary.org/obo/UBERON_0000941

http://purl.obolibrary.org/obo/UBERON_0000959

contributes to morphology of

http://purl.obolibrary.org/obo/UBERON_0003544

database_cross_reference

XAO:0004101

NCIT:C33218

SCTID:280952003

TAO:0000252

EMAPA:16678

BIRNLEX:1684

ZFA:0000252

Wikipedia:Optic_tract

VHOG:0001164

neuronames:460

EMAPA:35617

MESH:D014795

UMLS:C0152405

BAMS:opt

BM:Tel-OT

DHBA:10589

DMBA:17785

FMA:62046

GAID:735

HBA:9309

MA:0001099

MBA:125

definition

Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF].

depiction

https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb

http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png

https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb

editor note

relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with'

extends_fibers_into

http://purl.obolibrary.org/obo/UBERON_0000941

http://purl.obolibrary.org/obo/UBERON_0000959

has exact synonym

optic lemniscus

has related synonym

optic tracts

visual pathway

tractus opticus

tractus optici

has_obo_namespace

uberon

id

UBERON:0001908

in_subset

http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

innervates

http://purl.obolibrary.org/obo/UBERON_0000966

label

optic tract

notation

UBERON:0001908

overlaps

http://purl.obolibrary.org/obo/UBERON_0003544

part_of

http://purl.obolibrary.org/obo/UBERON_0003931

http://purl.obolibrary.org/obo/RO_0002577

http://purl.obolibrary.org/obo/UBERON_0002104

prefixIRI

UBERON:0001908

prefLabel

optic tract

RO_0002175

http://purl.obolibrary.org/obo/NCBITaxon_9606

treeView

http://purl.obolibrary.org/obo/UBERON_0003931

http://purl.obolibrary.org/obo/RO_0002577

http://purl.obolibrary.org/obo/UBERON_0002104

subClassOf

http://purl.obolibrary.org/obo/UBERON_0011591

http://purl.obolibrary.org/obo/UBERON_0001018

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0001908 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 DOID SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 UBERON SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 DOID SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 CL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 MONDO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 NPOKB SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 HHEAR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 KTAO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 CCF SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 FNS-H SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001908 GO-PLUS LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 DOID LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 CL LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 UBERON LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 DOID LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 OBA LOOM
http://purl.obolibrary.org/obo/XAO_0004101 XPO LOOM
http://purl.obolibrary.org/obo/ZFA_0000252 ZP LOOM
http://purl.bioontology.org/ontology/RCD/Xa1aJ RCD LOOM
http://purl.obolibrary.org/obo/EMAPA_35617 EMAPA LOOM
http://radlex.org/RID/RID22696 RADLEX LOOM
http://purl.obolibrary.org/obo/XAO_0004101 XAO LOOM
http://purl.obolibrary.org/obo/MA_0001099 MA LOOM
http://www.semanticweb.org/ontologies/2009/9/Ontology1255357986125.owl#Optic_tract BRCT LOOM
http://purl.jp/bio/4/id/201506075587187756 IOBC LOOM
http://purl.obolibrary.org/obo/ZFA_0000252 ZFA LOOM
http://id.nlm.nih.gov/mesh/D065866 MDM LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0152405 OCHV LOOM
http://purl.obolibrary.org/obo/TAO_0000252 TAO LOOM
http://www.co-ode.org/ontologies/galen#OpticTract GALEN LOOM
http://uri.interlex.org/paxinos/uris/rat/labels/674 NIFSTD LOOM
http://api.brain-map.org/api/v2/data/Structure/125 NPOKB LOOM
http://api.brain-map.org/api/v2/data/Structure/125 NIFSTD LOOM
http://localhost/plosthes.2017-1#3807 PLOSTHES LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C33218 NCIT LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_1684 NIFSTD LOOM
http://purl.bioontology.org/ontology/SNMI/T-A8060 SNMI LOOM
http://purl.org/sig/ont/fma/fma62046 FMA LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_1684 BIRNLEX LOOM
http://purl.bioontology.org/ontology/MESH/D065866 MESH LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 HHEAR LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 KTAO LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 CCF LOOM
http://purl.obolibrary.org/obo/UBERON_0001908 FNS-H LOOM
http://purl.org/obo/owlapi/fma#FMA_62046 BIOMODELS LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Optic_Tract APANEUROCLUSTER LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Optic_Tract APAONTO LOOM
http://purl.bioontology.org/ontology/CSP/0479-8896 CRISP LOOM
http://purl.obolibrary.org/obo/OMIT_0028782 OMIT LOOM
http://purl.obolibrary.org/obo/NCIT_C33218 BERO LOOM