Biological Pathway Taxonomy

Last uploaded: March 30, 2022
Preferred Name

Follicular Lymphoma

Synonyms

PathwayType: signaling

CellType: cancer cell

PMID: 17039231

CellType: B-cell

Organ_System: lymphatic system

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-fea803fe-56c1-460e-a850-5f3f9b2327fd

PMID: 22973275

PMID: 22224767

PMID: 21970951

PMID: 23023713

PMID: 21083019

Description: Follicular lymphoma is the second most common type of non-Hodgkin lymphoma. Pathway is built manually using published studies.

Notes: Headnote: Follicular lymphoma (FL) is the second most common type of non-Hodgkin lymphoma and it occurs at an average age of 60 years. It is indolent and characterized by slow progression with a high response to therapy. Nonetheless, most patients eventually develop increasingly resistant disease, and in up to 45% of cases, the original indolent lymphoma transforms into an aggressive subtype. FL generally involves the lymph nodes (LN), spleen, bone marrow (BM), and peripheral blood. The majority of patients present with stage III/IV disease at the time of diagnosis. Morphologically, FL is defined as a mature B-cell neoplasm resulting from the malignant transformation of germinal center derived follicular B-cells. Neoplastic cells are organized in follicles. FL is subdivided into grades 1, 2, 3a, and 3b based on morphology criteria (number of centroblasts); grade 1 has the most favorable prognosis while grade 3b is the most aggressive. Signaling description: Over 85% of FL cases display t(14;18) translocation which results in IGH/BCL2 fusion formation and constant BCL2 activation. The current (Hypothesis) of FL pathogenesis recognizes t(14;18)-positive circulating B-cells as potentially tumor-initiating cells but it is challenged by the observation that similar cells can be detected in the blood of 50-70% of healthy individuals who are not prone to developing FL. Additional oncogenic events are clearly required for full malignant transformation. They include genetic and epigenetic changes. Genetic changes are represented by TNFRSF14, TNFAIP3, EPHA7, and histone-modifying genes (EZH2, MLL2, CREBBP, EP300, and MEF2B) mutations. Epigenetic changes include aberrant methylation of the CDKN2A, CDKN2B, CDKN1C, GSTP1, PLK2, PTPN6, DAPK1, GADD45G, IL12RB2, and androgen receptor (AR) genes. In addition, the transformation of FL into aggressive lymphomas occurs due to MYC and BCL-6 activating mutations as well as TP53, ATM, CDKN2A, CDKN2B, and FAS deletions or inactivating mutations. Furthermore, microenvironment plays an important role in FL development. Beneficial signals for growth and survival include IL-4, IL-21, CXCL12, and CXCL13. B-cell receptor (BCR) signaling occurs through the stimulation of BCR by the innate immune system through N-glycans or by specific antigen presentation. T-helper cells interact with FL cells through their T-cell receptor, MHC class II and CD40L/CD40, providing survival signals. In conclusion, as any indolent lymphoma, FL in early stages has a good response to standard chemotherapy (includes Cytoxan, vincristine, doxorubicin, prednisolone) plus anti-CD20 antibodies (rituximab). The median overall survival time reaches 10 years or more with current treatment. Outcome effects: Overall, the genetic changes in FL result in block of apoptosis and /or activation of proliferation and inhibit plasma cell differentiation. Highlighted proteins: Proteins with increased expression or activity are highlighted in red, and proteins with decreased expression or activity are highlighted in blue. Mutated genes: Mutated genes are shown in white-out style.

NodeType: Pathway

Pathway_Author: S. Sozin www.researchgate.net/profile/Sergey-Sozin

PMID: 12959350

Organ: lymph node

Source: Diseases

ID

urn:agi-pathway:uuid-fea803fe-56c1-460e-a850-5f3f9b2327fd

database_cross_reference

PS:PathwayType

PS:Description

PS:Pathway_Author

PS:Link

PS:CellType

PS:Organ_System

PS:PMID

PS:NodeType

PS:Notes

PS:Organ

PS:Source

has_exact_synonym

PathwayType: signaling

CellType: cancer cell

PMID: 17039231

CellType: B-cell

Organ_System: lymphatic system

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-fea803fe-56c1-460e-a850-5f3f9b2327fd

PMID: 22973275

PMID: 22224767

PMID: 21970951

PMID: 23023713

PMID: 21083019

Description: Follicular lymphoma is the second most common type of non-Hodgkin lymphoma. Pathway is built manually using published studies.

Notes: Headnote: Follicular lymphoma (FL) is the second most common type of non-Hodgkin lymphoma and it occurs at an average age of 60 years. It is indolent and characterized by slow progression with a high response to therapy. Nonetheless, most patients eventually develop increasingly resistant disease, and in up to 45% of cases, the original indolent lymphoma transforms into an aggressive subtype. FL generally involves the lymph nodes (LN), spleen, bone marrow (BM), and peripheral blood. The majority of patients present with stage III/IV disease at the time of diagnosis. Morphologically, FL is defined as a mature B-cell neoplasm resulting from the malignant transformation of germinal center derived follicular B-cells. Neoplastic cells are organized in follicles. FL is subdivided into grades 1, 2, 3a, and 3b based on morphology criteria (number of centroblasts); grade 1 has the most favorable prognosis while grade 3b is the most aggressive. Signaling description: Over 85% of FL cases display t(14;18) translocation which results in IGH/BCL2 fusion formation and constant BCL2 activation. The current (Hypothesis) of FL pathogenesis recognizes t(14;18)-positive circulating B-cells as potentially tumor-initiating cells but it is challenged by the observation that similar cells can be detected in the blood of 50-70% of healthy individuals who are not prone to developing FL. Additional oncogenic events are clearly required for full malignant transformation. They include genetic and epigenetic changes. Genetic changes are represented by TNFRSF14, TNFAIP3, EPHA7, and histone-modifying genes (EZH2, MLL2, CREBBP, EP300, and MEF2B) mutations. Epigenetic changes include aberrant methylation of the CDKN2A, CDKN2B, CDKN1C, GSTP1, PLK2, PTPN6, DAPK1, GADD45G, IL12RB2, and androgen receptor (AR) genes. In addition, the transformation of FL into aggressive lymphomas occurs due to MYC and BCL-6 activating mutations as well as TP53, ATM, CDKN2A, CDKN2B, and FAS deletions or inactivating mutations. Furthermore, microenvironment plays an important role in FL development. Beneficial signals for growth and survival include IL-4, IL-21, CXCL12, and CXCL13. B-cell receptor (BCR) signaling occurs through the stimulation of BCR by the innate immune system through N-glycans or by specific antigen presentation. T-helper cells interact with FL cells through their T-cell receptor, MHC class II and CD40L/CD40, providing survival signals. In conclusion, as any indolent lymphoma, FL in early stages has a good response to standard chemotherapy (includes Cytoxan, vincristine, doxorubicin, prednisolone) plus anti-CD20 antibodies (rituximab). The median overall survival time reaches 10 years or more with current treatment. Outcome effects: Overall, the genetic changes in FL result in block of apoptosis and /or activation of proliferation and inhibit plasma cell differentiation. Highlighted proteins: Proteins with increased expression or activity are highlighted in red, and proteins with decreased expression or activity are highlighted in blue. Mutated genes: Mutated genes are shown in white-out style.

NodeType: Pathway

Pathway_Author: S. Sozin www.researchgate.net/profile/Sergey-Sozin

PMID: 12959350

Organ: lymph node

Source: Diseases

id

urn:agi-pathway:uuid-fea803fe-56c1-460e-a850-5f3f9b2327fd

label

Follicular Lymphoma

notation

uuid-fea803fe-56c1-460e-a850-5f3f9b2327fd

prefLabel

Follicular Lymphoma

treeView

urn:agi-folder:f

urn:agi-folder:follicular_lymphoma

urn:agi-folder:lymphatic_system

subClassOf

urn:agi-folder:f

urn:agi-folder:follicular_lymphoma

urn:agi-folder:lymphatic_system

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http://purl.obolibrary.org/obo/DOID_0050873 DOID LOOM
http://purl.obolibrary.org/obo/MONDO_0018906 EFO LOOM
http://purl.obolibrary.org/obo/DOID_0050873 DOID LOOM
http://purl.obolibrary.org/obo/HP_0033125 HP LOOM
http://purl.obolibrary.org/obo/MONDO_0018906 MONDO LOOM
http://www.limics.org/hrdo/rdfns#pat_id_8750 HRDO LOOM
http://purl.jp/bio/4/id/200906028269982800 IOBC LOOM
http://purl.bioontology.org/ontology/PDQ/CDR0000795359 PDQ LOOM
http://localhost/plosthes.2017-1#7691 PLOSTHES LOOM
http://purl.bioontology.org/ontology/MEDDRA/10085128 MEDDRA LOOM
http://purl.bioontology.org/ontology/RCTV2/B628.00 RCTV2 LOOM
http://purl.bioontology.org/ontology/ICD10CM/C82 ICD10CM LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0024301 OCHV LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Follicular_Lymphoma CSEO LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/55150002 SNOMEDCT LOOM
http://www.orpha.net/ORDO/Orphanet_545 ORDO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3209 NCIT LOOM
http://purl.obolibrary.org/obo/MONDO_0018906 DOVES LOOM
http://purl.obolibrary.org/obo/NCIT_C3209 BERO LOOM
http://purl.obolibrary.org/obo/DOID_0050873 HHEAR LOOM
http://purl.obolibrary.org/obo/DOID_0050873 NIFSTD LOOM
http://purl.obolibrary.org/obo/DOID_0050873 MIDO LOOM
http://purl.obolibrary.org/obo/DOID_0050873 FNS-H LOOM
http://vocab.vodan-totafrica.info/vodana-terms/vdiseases/2A80 VODANADISEASES LOOM
http://www.co-ode.org/ontologies/galen#FollicularLymphoma GALEN LOOM
http://purl.obolibrary.org/obo/HP_0033125 HP LOOM
http://purl.obolibrary.org/obo/HP_0033125 UPHENO LOOM