Biological Pathway Taxonomy

Last uploaded: March 30, 2022
Preferred Name

Neuroblastoma
Synonyms

Organ_System: nervous system

PathwayType: signaling

CellType: cancer cell

CellType: neural stem cell

PMID: 12612655

PMID: 21295685

Description: Neuroblastoma (NB), the most common extracranial solid tumor in childhood, is derived from precursor cells of the peripheral (sympathetic) nervous system (neural crest neuroblasts). Pathway is built manually using published studies.

Notes: Headnote: Neuroblastoma (NB), the most common extracranial solid tumor in childhood, is derived from precursor cells of the peripheral (sympathetic) nervous system (neural crest neuroblasts). Tumors are most frequently found in the adrenal medulla and paraspinal ganglia, but can arise anywhere along the sympathetic chain. Signaling description: MYCN amplification is found in about 22% of NB cases. Tumor suppressors including CHD5, MIR34A, and KIF1B may be affected due to a loss of the short arm of chromosome 1. TP53 or CDKN2A may be mutated in rare cases of NB and the amplification of MDM2, DDX1, and MYCL1 are found in small groups of NB. Activating germline mutations of ALK are responsible for the majority of hereditary NB cases. Moreover, ALK point mutations are often found in sporadic NB cases. Mutations in the PHOX2B gene have been observed in familial and sporadic forms of NB. NB patients with PHOX2B mutations also may have familial disorders of the neural crest such as Hirschsprung disease and congenital central hypoventilation syndrome. Sonic hedgehog (SHH) signaling is one of the key pathways in NB development. PTCH1, SMO, GLI1, and GLI2 were found to be overexpressed while GLI3 was found to be underexpressed. In addition, neurotrophin receptor signaling was found to be important in malignant transformation of sympathetic neuroblasts. The family of neurotrophin receptors includes neurotrophic tyrosine kinase receptor type 1, 2, and 3 (NTRK1/2/3). The ligands of NTRK involved in NB pathogenesis include nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and neurotrophin 3 and 4 (NTF3/4). These ligand-receptor interactions induce the PI3K/AKT1 and Ras/MAPK signaling. In addition to NGFs, other growth factors are also significant in the development of the sympathoadrenal lineage cells and transformed neuroblasts such as EGF, VEGFA, and IGF1/2. Lastly, the expression of neurogenic transcription factors including PHOX2A, PHOX2B, ASCL1, and HAND2 is controlled by bone morphogenetic proteins (BMP2/4/7) and Notch signaling. Outcome effects: The growth factor signaling in NB promotes cell survival and proliferation. The genetic rearrangements found in NB also result in the inhibition of apoptosis and activation of proliferation. In addition, constant SHH activation drives cell proliferation. Highlighted proteins: Proteins with increased expression or activity are highlighted in red, and proteins with decreased expression or activity are highlighted in blue. Mutated genes: Mutated genes are shown in white-out style.

PMID: 19417027

Tissue: nerve tissue

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-c258812e-5720-43dd-ab31-5b90a1db677e

PMID: 22430387

NodeType: Pathway

Pathway_Author: S. Sozin www.researchgate.net/profile/Sergey-Sozin

PMID: 19622100

PMID: 15288262

Source: Diseases

PMID: 22585002

PMID: 12438307

ID

urn:agi-pathway:uuid-c258812e-5720-43dd-ab31-5b90a1db677e

database_cross_reference

PS:PathwayType

PS:Description

PS:Tissue

PS:Pathway_Author

PS:Link

PS:CellType

PS:Organ_System

PS:PMID

PS:NodeType

PS:Notes

PS:Source

has_exact_synonym

Organ_System: nervous system

PathwayType: signaling

CellType: cancer cell

CellType: neural stem cell

PMID: 12612655

PMID: 21295685

Description: Neuroblastoma (NB), the most common extracranial solid tumor in childhood, is derived from precursor cells of the peripheral (sympathetic) nervous system (neural crest neuroblasts). Pathway is built manually using published studies.

Notes: Headnote: Neuroblastoma (NB), the most common extracranial solid tumor in childhood, is derived from precursor cells of the peripheral (sympathetic) nervous system (neural crest neuroblasts). Tumors are most frequently found in the adrenal medulla and paraspinal ganglia, but can arise anywhere along the sympathetic chain. Signaling description: MYCN amplification is found in about 22% of NB cases. Tumor suppressors including CHD5, MIR34A, and KIF1B may be affected due to a loss of the short arm of chromosome 1. TP53 or CDKN2A may be mutated in rare cases of NB and the amplification of MDM2, DDX1, and MYCL1 are found in small groups of NB. Activating germline mutations of ALK are responsible for the majority of hereditary NB cases. Moreover, ALK point mutations are often found in sporadic NB cases. Mutations in the PHOX2B gene have been observed in familial and sporadic forms of NB. NB patients with PHOX2B mutations also may have familial disorders of the neural crest such as Hirschsprung disease and congenital central hypoventilation syndrome. Sonic hedgehog (SHH) signaling is one of the key pathways in NB development. PTCH1, SMO, GLI1, and GLI2 were found to be overexpressed while GLI3 was found to be underexpressed. In addition, neurotrophin receptor signaling was found to be important in malignant transformation of sympathetic neuroblasts. The family of neurotrophin receptors includes neurotrophic tyrosine kinase receptor type 1, 2, and 3 (NTRK1/2/3). The ligands of NTRK involved in NB pathogenesis include nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and neurotrophin 3 and 4 (NTF3/4). These ligand-receptor interactions induce the PI3K/AKT1 and Ras/MAPK signaling. In addition to NGFs, other growth factors are also significant in the development of the sympathoadrenal lineage cells and transformed neuroblasts such as EGF, VEGFA, and IGF1/2. Lastly, the expression of neurogenic transcription factors including PHOX2A, PHOX2B, ASCL1, and HAND2 is controlled by bone morphogenetic proteins (BMP2/4/7) and Notch signaling. Outcome effects: The growth factor signaling in NB promotes cell survival and proliferation. The genetic rearrangements found in NB also result in the inhibition of apoptosis and activation of proliferation. In addition, constant SHH activation drives cell proliferation. Highlighted proteins: Proteins with increased expression or activity are highlighted in red, and proteins with decreased expression or activity are highlighted in blue. Mutated genes: Mutated genes are shown in white-out style.

PMID: 19417027

Tissue: nerve tissue

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-c258812e-5720-43dd-ab31-5b90a1db677e

PMID: 22430387

NodeType: Pathway

Pathway_Author: S. Sozin www.researchgate.net/profile/Sergey-Sozin

PMID: 19622100

PMID: 15288262

Source: Diseases

PMID: 22585002

PMID: 12438307

id

urn:agi-pathway:uuid-c258812e-5720-43dd-ab31-5b90a1db677e

label

Neuroblastoma

notation

uuid-c258812e-5720-43dd-ab31-5b90a1db677e

prefLabel

Neuroblastoma

treeView

urn:agi-folder:nerve_tissue

urn:agi-folder:nervous_system

urn:agi-folder:neuroblastoma

urn:agi-folder:n

subClassOf

urn:agi-folder:nerve_tissue

urn:agi-folder:nervous_system

urn:agi-folder:neuroblastoma

urn:agi-folder:n

Delete Subject Author Type Created
No notes to display
Create mapping

Delete Mapping To Ontology Source
http://purl.bioontology.org/ontology/WHO/1130 WHO-ART LOOM
http://purl.bioontology.org/ontology/MEDDRA/10029260 MEDDRA LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D009447 RH-MESH LOOM
http://localhost/plosthes.2017-1#3649 PLOSTHES LOOM
http://nanbyodata.jp/ontology/NANDO_2200040 NANDO LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_12631 BIRNLEX LOOM
http://www.owl-ontologies.com/unnamed.owl#RID17268 DERMLEX LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0027819 OCHV LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.557.470.670.590.650.550 RH-MESH LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/87364003 SNOMEDCT LOOM
http://www.ebi.ac.uk/efo/EFO_0000621 CLO LOOM
http://www.ebi.ac.uk/efo/EFO_0000621 CCONT LOOM
http://www.ebi.ac.uk/efo/EFO_0000621 EFO LOOM
http://www.ebi.ac.uk/efo/EFO_0000621 EFO LOOM
http://purl.bioontology.org/ontology/RCD/Xa99D RCD LOOM
http://purl.bioontology.org/ontology/MEDLINEPLUS/C0027819 MEDLINEPLUS LOOM
http://purl.bioontology.org/ontology/CSP/2012-7126 CRISP LOOM
http://radlex.org/RID/RID4454 RADLEX LOOM
http://purl.bioontology.org/ontology/OMIM/MTHU013400 OMIM LOOM
http://doe-generated-ontology.com/OntoAD#C0027819 ONTOAD LOOM
http://www.semanticweb.org/ontologies/2012/11/abnormalities.owl#phenodb:2407 IFAR LOOM
http://www.owl-ontologies.com/Ontology1358660052.owl#Neuroblastoma PEDTERM LOOM
http://www.limics.org/hrdo/rdfns#sgn_id_50940 HRDO LOOM
http://purl.bioontology.org/ontology/MESH/D009447 MESH LOOM
http://purl.jp/bio/4/id/200906042157036069 IOBC LOOM
http://scai.fraunhofer.de/CSEO#Neuroblastoma CSEO LOOM
http://id.nlm.nih.gov/mesh/D009447 MDM LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3270 NCIT LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#8628 OCHV LOOM
http://purl.bioontology.org/ontology/PDQ/CDR0000042067 PDQ LOOM
http://purl.jp/bio/4/id/kb0000001465 IOBC LOOM
http://www.phoc.org.cn/pmo/class/PMO_00085556 PMAPP-PMO LOOM
http://purl.obolibrary.org/obo/HP_0003006 HP LOOM
http://purl.obolibrary.org/obo/HP_0003006 UPHENO LOOM
http://purl.obolibrary.org/obo/MPATH_376 MPATH LOOM
http://purl.obolibrary.org/obo/MPATH_376 UPHENO LOOM
http://purl.obolibrary.org/obo/MPATH_376 ZP LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/432328008 SNOMEDCT LOOM
http://purl.bioontology.org/ontology/RCTV2/B546.00 RCTV2 LOOM
http://www.co-ode.org/ontologies/galen#Neuroblastoma GALEN LOOM
http://purl.obolibrary.org/obo/NCIT_C3270 BERO LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_12631 NIFDYS LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_12631 NIFSTD LOOM
http://www.owl-ontologies.com/NPOntology.owl#DOID_769 NATPRO LOOM
http://purl.obolibrary.org/obo/OMIT_0010474 OMIT LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.557.465.625.600.590.650.550 RH-MESH LOOM
http://www.limics.org/hrdo/rdfns#pat_id_548 HRDO LOOM
http://purl.org/m4m/1200 GFF-M4M LOOM
http://purl.obolibrary.org/obo/MONDO_0005072 MONDO LOOM
http://purl.obolibrary.org/obo/MONDO_0005072 DOVES LOOM
http://purl.obolibrary.org/obo/DERMO_0001102 DERMO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#C04.557.580.625.600.590.650.550 RH-MESH LOOM
http://www.orpha.net/ORDO/Orphanet_635 ORDO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Neuroblastoma CSEO LOOM
http://purl.obolibrary.org/obo/DOID_769 CLO LOOM
http://purl.obolibrary.org/obo/DOID_769 DTO LOOM
http://purl.obolibrary.org/obo/DOID_769 DOID LOOM
http://purl.obolibrary.org/obo/DOID_769 BAO LOOM
http://purl.obolibrary.org/obo/DOID_769 HHEAR LOOM
http://purl.obolibrary.org/obo/DOID_769 NIFSTD LOOM
http://purl.obolibrary.org/obo/DOID_769 MIDO LOOM
http://purl.obolibrary.org/obo/DOID_769 VO LOOM
http://purl.obolibrary.org/obo/DOID_769 FNS-H LOOM
rgo:02158 GAMUTS LOOM