BioAssay Ontology

Last uploaded: February 21, 2024
Preferred Name

mass spectrometry

Synonyms
Definitions

This method is used to detect compounds that are bound to the protein targets. The unbound compounds are separated by affinity based, size exclusion, or ultrafiltration methods. The bound compounds are eluted from the protein and detected by mass spectrometry. Based on the separation method, the throughput varies: between 200-2700 compounds can be loaded in each run for separation. Mass spectrometry is used to determine the chemical structure of molecules. The samples are vaporized, followed by ionization and then the mass to charge ratio of the particles is analyzed.

ID

http://www.bioassayontology.org/bao#BAO_0000055

alternative term

MS

label

mass spectrometry

prefixIRI

bao:BAO_0000055

prefLabel

mass spectrometry

textual definition

This method is used to detect compounds that are bound to the protein targets. The unbound compounds are separated by affinity based, size exclusion, or ultrafiltration methods. The bound compounds are eluted from the protein and detected by mass spectrometry. Based on the separation method, the throughput varies: between 200-2700 compounds can be loaded in each run for separation. Mass spectrometry is used to determine the chemical structure of molecules. The samples are vaporized, followed by ionization and then the mass to charge ratio of the particles is analyzed.

subClassOf

http://www.bioassayontology.org/bao#BAO_0000035

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http://purl.obolibrary.org/obo/MS_1000268 MS LOOM
http://purl.obolibrary.org/obo/CHMO_0000470 CHMO LOOM
http://doe-generated-ontology.com/OntoAD#C0037813 ONTOAD LOOM
http://purl.org/pan-science/PaNET/PaNET01268 PANET LOOM
http://localhost/plosthes.2017-1#5938 PLOSTHES LOOM
http://id.nlm.nih.gov/mesh/D013058 MDM LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Mass_Spectrometry CSEO LOOM
http://purl.obolibrary.org/obo/ID_0000066 BCTEO LOOM
http://purl.allotrope.org/ontologies/process#AFP_0001427 AFO LOOM
http://purl.bioontology.org/ontology/CSP/0632-6188 CRISP LOOM
http://www.semanticweb.org/ontologies/2010/3/Ontology1271664172453.owl#Mass_spectrometry PLIO LOOM
http://purl.bioontology.org/ontology/PDQ/CDR0000486889 PDQ LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#E05.196.566 RH-MESH LOOM
https://pat.nichd.nih.gov/patinvestigativetechniques/IT.10 PATIT LOOM
http://purl.obolibrary.org/obo/MMO_0000534 MMO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D013058 RH-MESH LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17156 NCIT LOOM
http://hadatac.org/ont/hasco/MassSpectrometry HHEARP LOOM
http://hadatac.org/ont/hasco/MassSpectrometry CHEAR LOOM
http://hadatac.org/ont/hasco/MassSpectrometry SCO LOOM
http://hadatac.org/ont/hasco/MassSpectrometry HHEAR LOOM
http://hadatac.org/ont/hasco/MassSpectrometry HASCO LOOM
http://purl.bioontology.org/ontology/MESH/D013058 MESH LOOM
http://www.case.edu/ProvCaRe/provcare#MassSpectrometry NEUROBRG LOOM
http://jermontology.org/ontology/JERMOntology#Mass_spectrometry JERM LOOM
https://purl.org/orex/voc/analyticalTechnique/Massspectrometry O-REXTECH LOOM
http://purl.jp/bio/4/id/200906092400634899 IOBC LOOM
https://bitbucket.org/PlantExpAssay/ontology/raw/v0.1/PlantExperimentalAssayOntology.owl#PEAO:000039 PEAO LOOM
http://edamontology.org/topic_0134 EDAM LOOM
http://edamontology.org/topic_0134 BMT LOOM
http://purl.obolibrary.org/obo/FBcv_0003218 FB-CV LOOM
http://purl.obolibrary.org/obo/OMIT_0013943 OMIT LOOM
http://purl.bioontology.org/ontology/RCTV2/58A2.00 RCTV2 LOOM
http://purl.obolibrary.org/obo/TEMP#251000000179 VIMM LOOM
http://purl.obolibrary.org/obo/FIX_0000047 FIX LOOM
http://purl.bioontology.org/ontology/RCD/58A2. RCD LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0037813 OCHV LOOM
http://purl.obolibrary.org/obo/MESH_D013058 BERO LOOM

The BioAssay Ontology integrates with OntoloBridge, allowing community users to suggest additions to the public ontology. Complete the template below to submit a term request directly to the ontology maintainer.

Term Label (required)
Suggested term name. If a term can be described with multiple synonyms, only list the preferred name here.
Example: tissue-based format

Term description (required)
A brief definition, description, or usage of your suggested term. Additional term synonyms may be listed in this section.
Example: Involves the use of a tissue derived from a living organism and is a heterogeneous assay type.

Superclass (required)
The parent term of the suggested term. The parent term should be an existing entry of the current ontology. The superclass can be selected directly from the 'Classes' viewer on Bioportal's left tree navigation.
Example: assay format

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