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Software Ontology
Last uploaded:
March 5, 2023
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| Preferred Name | Salmon | |
| Synonyms |
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| Definitions |
Salmon is a tool for quantifying the expression of transcripts using RNA-seq data. Salmon uses new algorithms (specifically, coupling the concept of quasi-mapping with a two-phase inference procedure) to provide accurate expression estimates very quickly (i.e. wicked-fast) and while using little memory. Salmon performs its inference using an expressive and realistic model of RNA-seq data that takes into account experimental attributes and biases commonly observed in real RNA-seq data. AL 8.10.2019: Added in reference to https://github.com/allysonlister/swo/issues/15 |
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| ID |
http://www.ebi.ac.uk/swo/SWO_1100132 |
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| comment |
AL 8.10.2019: Added in reference to https://github.com/allysonlister/swo/issues/15
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| Contributor | ||
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Allyson Lister
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| label |
Salmon
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| prefixIRI |
swo:SWO_1100132
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| prefLabel |
Salmon
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| textual definition |
Salmon is a tool for quantifying the expression of transcripts using RNA-seq data. Salmon uses new algorithms (specifically, coupling the concept of quasi-mapping with a two-phase inference procedure) to provide accurate expression estimates very quickly (i.e. wicked-fast) and while using little memory. Salmon performs its inference using an expressive and realistic model of RNA-seq data that takes into account experimental attributes and biases commonly observed in real RNA-seq data.
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