| Acronym | SSBD |
| Visibility | Public |
| Description | SSBD Ontology is a two-tier model for FAIR metadata of bioimaging. The repository layer captures the minimum information required for rapid, DOI-based release of image datasets, while the added-value layer enriches the same instances with detailed biological context (organism, strain, cell/cell-line, anatomy, GO terms) and imaging provenance (imaging method, instrument, OME-Zarr links). SSBD Ontology re-uses and aligns with OBO Foundry ontologies— ChEBI, CL, CLO, UBERON, GO, FBbi, OBI, IAO—so that multi scale data information can be integrated uniformly. The ontology is distributed under CC-BY 4.0., The SSBD Ontology is an ontology of SSBD (https://ssbd.riken.jp). SSBD is a platform for sharing and reusing bioimaging data. SSBD:database is an added-value database for bioimages and biological dynamics data. It provides a rich set of open resources for analyzing microscopy images and qunatitative data of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Microscopy images and quantitative biological data are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations. |
| Status | Alpha |
| Format | OWL |
| Categories |
| Contact | Yuki Yamagata ([email protected]) Koji Kyoda ([email protected]) |
| Creation date | July 23, 2025
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| Deprecated |
false
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| Homepage |
https://github.com/openssbd/ssbd-ontology
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| License | 
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| Modification date | June 19, 2025
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| Object creation date property | |
| Object modification date property | |
| Preferred namespace prefix |
image
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| Subject |
https://data.bioontology.org/categories/Imaging
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| Submission date | July 23, 2025
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| Version IRI | |
| Version information |
2025-05-12
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| uri |