PMO Precision Medicine Ontology

Last uploaded: December 16, 2020
Preferred Name

Late Endosome

Synonyms
Definitions

"A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center." [NIF_Subcellular:nlx_subcell_20090702, PMID:11964142, PMID:2557062]

ID

http://www.phoc.org.cn/pmo/class/PMO_00053798

Database_Cross_Reference

GO:0005770

Definition

"A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center." [NIF_Subcellular:nlx_subcell_20090702, PMID:11964142, PMID:2557062]

Gene Annotation

TF(UniProtKB:P02787)

VPS41(UniProtKB:P49754)

WDR48(UniProtKB:Q8TAF3)

STX8(UniProtKB:Q9UNK0)

ATG9A(UniProtKB:Q7Z3C6)

CLTCL1(UniProtKB:P53675)

STX7(UniProtKB:O15400)

ANKRD13D(UniProtKB:Q6ZTN6)

VPS18(UniProtKB:Q9P253)

TMEM9(UniProtKB:Q9P0T7)

RILP(UniProtKB:Q96NA2)

RUBCN(UniProtKB:Q92622)

PARM1(UniProtKB:Q6UWI2)

AP5M1(UniProtKB:Q9H0R1)

KIDINS220(UniProtKB:Q9ULH0)

ANKRD13B(UniProtKB:Q86YJ7)

CLEC16A(UniProtKB:Q2KHT3)

HTT(UniProtKB:P42858)

SNX16(UniProtKB:P57768)

LAMP2(UniProtKB:P13473)

OSBPL1A(UniProtKB:Q9BXW6)

GNPNAT1(UniProtKB:Q96EK6)

GRN(UniProtKB:P28799)

KIAA1324(UniProtKB:Q6UXG2)

NTRK1(UniProtKB:P04629)

VPS29(UniProtKB:Q9UBQ0)

SDF4(UniProtKB:Q9BRK5)

SLC30A4(UniProtKB:O14863)

ECPAS(UniProtKB:Q5VYK3)

ATP13A2(UniProtKB:Q9NQ11)

TCIRG1(UniProtKB:Q13488)

RAB9A(UniProtKB:P51151)

AP5S1(UniProtKB:Q9NUS5)

SLC30A3(UniProtKB:Q99726)

ATP7B(UniProtKB:P35670)

UVRAG(UniProtKB:Q9P2Y5)

WASHC1(UniProtKB:A8K0Z3)

CD1E(UniProtKB:P15812)

VAMP5(UniProtKB:O95183)

MAP1LC3A(UniProtKB:Q9H492)

TMEM59(UniProtKB:Q9BXS4)

IGF2R(UniProtKB:P11717)

LGMN(UniProtKB:Q99538)

SLA2(UniProtKB:Q9H6Q3)

RAB7A(UniProtKB:P51149)

TMEM230(UniProtKB:Q96A57)

TSG101(UniProtKB:Q99816)

SLC38A9(UniProtKB:Q8NBW4)

ANKRD13A(UniProtKB:Q8IZ07)

RNF215(UniProtKB:Q9Y6U7)

VPS33B(UniProtKB:Q9H267)

KCNQ1(UniProtKB:P51787)

RAB14(UniProtKB:P61106)

LAMP1(UniProtKB:P11279)

PSAP(UniProtKB:P07602)

VPS11(UniProtKB:Q9H270)

DERL1(UniProtKB:Q9BUN8)

DERL2(UniProtKB:Q9GZP9)

RNF128(UniProtKB:Q8TEB7)

AP1AR(UniProtKB:Q63HQ0)

MYO5A(UniProtKB:Q9Y4I1)

VPS16(UniProtKB:Q9H269)

RAP1A(UniProtKB:P62834)

MAPK3(UniProtKB:P27361)

VPS35(UniProtKB:Q96QK1)

SLC9A6(UniProtKB:Q92581)

NBR1(UniProtKB:Q14596)

UNC13D(UniProtKB:Q70J99)

WASH2P(UniProtKB:Q6VEQ5)

PIK3R4(UniProtKB:Q99570)

VPS4A(UniProtKB:Q9UN37)

MCOLN1(UniProtKB:Q9GZU1)

SLC31A1(UniProtKB:O15431)

ASTN2(UniProtKB:O75129)

TMEM192(UniProtKB:Q8IY95)

DYNC1LI2(UniProtKB:O43237)

FYCO1(UniProtKB:Q9BQS8)

RAPGEF2(UniProtKB:Q9Y4G8)

CHID1(UniProtKB:Q9BWS9)

CTNS(UniProtKB:O60931)

BACE1(UniProtKB:P56817)

SQSTM1(UniProtKB:Q13501)

CHMP3(UniProtKB:Q9Y3E7)

PCSK9(UniProtKB:Q8NBP7)

MICALL1(UniProtKB:Q8N3F8)

VPS26B(UniProtKB:Q4G0F5)

VIPAS39(UniProtKB:Q9H9C1)

RAB27A(UniProtKB:P51159)

TTPA(UniProtKB:P49638)

SNX14(UniProtKB:Q9Y5W7)

DYSF(UniProtKB:O75923)

CLN3(UniProtKB:Q13286)

CHMP2B(UniProtKB:Q9UQN3)

EXOC8(UniProtKB:Q8IYI6)

IFNAR1(UniProtKB:P17181)

M6PR(UniProtKB:P20645)

SPPL2A(UniProtKB:Q8TCT8)

DDIT3(UniProtKB:P35638)

ATP7A(UniProtKB:Q04656)

LDLR(UniProtKB:P01130)

ARF1(UniProtKB:P84077)

SLC30A2(UniProtKB:Q9BRI3)

SLC11A1(UniProtKB:P49279)

MTM1(UniProtKB:Q13496)

ANKRD27(UniProtKB:Q96NW4)

HSPA8(UniProtKB:P11142)

CLCN3(UniProtKB:P51790)

NSG1(UniProtKB:P42857)

CTSS(UniProtKB:P25774)

MAP2K2(UniProtKB:P36507)

CXCR4(UniProtKB:P61073)

MAGI2(UniProtKB:Q86UL8)

VPS33A(UniProtKB:Q96AX1)

F2R(UniProtKB:P25116)

NSG2(UniProtKB:Q9Y328)

NMNAT2(UniProtKB:Q9BZQ4)

MAP2K1(UniProtKB:Q02750)

PIK3C3(UniProtKB:Q8NEB9)

RAB22A(UniProtKB:Q9UL26)

MAPK1(UniProtKB:P28482)

ABCA5(UniProtKB:Q8WWZ7)

SRC(UniProtKB:P12931)

RAB7B(UniProtKB:Q96AH8)

MVB12B(UniProtKB:Q9H7P6)

RASGEF1B(UniProtKB:Q0VAM2)

LAMTOR2(UniProtKB:Q9Y2Q5)

label

Late Endosome

MCID

MC04787208

PMOID

PMO:00053798

prefixIRI

pmo:PMO_00053798

prefLabel

Late Endosome

Synonym

"PVC" BROAD []

"prevacuolar compartment" EXACT []

Tree Number

T10.3.7.100.7.91.13.4

T10.3.7.100.15.2.1.13.4

T10.3.4.4.2.1.13.4

T10.3.4.1.2.1.1.13.4

subClassOf

http://www.phoc.org.cn/pmo/class/PMO_00053795

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/GO_0005770 GO LOOM
http://purl.obolibrary.org/obo/GO_0005770 FYPO LOOM
http://purl.obolibrary.org/obo/GO_0005770 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0005770 GO LOOM
http://purl.obolibrary.org/obo/GO_0005770 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0005770 OBA LOOM
http://uri.neuinfo.org/nif/nifstd/nlx_subcell_20090702 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0005770 NIGO LOOM
http://purl.obolibrary.org/obo/GO_0005770 GO-EXT LOOM
http://purl.obolibrary.org/obo/GO_0005770 HOIP LOOM
http://purl.obolibrary.org/obo/GO_0005770 CCO LOOM
http://purl.obolibrary.org/obo/GO_0005770 REXO LOOM
http://purl.obolibrary.org/obo/GO_0005770 GEXO LOOM
http://purl.obolibrary.org/obo/GO_0005770 PHAGE LOOM
http://purl.obolibrary.org/obo/GO_0005770 COVID-19 LOOM
http://purl.obolibrary.org/obo/GO_0005770 BERO LOOM
http://purl.obolibrary.org/obo/GO_0005770 TXPO LOOM
http://purl.obolibrary.org/obo/GO_0005770 UPHENO LOOM
http://purl.obolibrary.org/obo/GO_0005770 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0005770 REGN_GO LOOM
http://purl.obolibrary.org/obo/GO_0005770 RETO LOOM
http://purl.obolibrary.org/obo/GO_0005770 ZP LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C32936 NCIT LOOM
http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Subcellular.owl#nlx_subcell_20090702 NIFSUBCELL LOOM
http://purl.org/sig/ont/fma/fma67467 FMA LOOM
http://purl.obolibrary.org/obo/NCIT_C32936 BERO LOOM
http://purl.org/obo/owl/GO#GO_0005770 BIOMODELS LOOM
http://purl.org/obo/owlapi/fma#FMA_67467 BIOMODELS LOOM
http://www.semanticweb.org/ADMO#c18 ADMO LOOM