Preferred Name

vancomycin
Synonyms

(2.2Sp,3.5Sa,2.6Sp)-O(4.2),C(3.4):C(5.4),O(4.6):C(3.5),C(2.7)-tricyclo[N-methyl-D-leucyl-3-chloro-(R)-beta-hydroxy-D-tyrosyl-L-asparaginyl-D-2-(4-{[2-O-(3-amino-2,3,6-trideoxy-3-C-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyl]oxy}phenyl)glycyl-D-2-(4-hydroxyphenyl)glycyl-3-chloro-(R)-beta-hydroxy-L-tyrosyl-L-2-(3,5-dihydroxyphenyl)glycine]

vancomicina

vancomicin

vancomycine

Vancocin

vancomycinum

(1S,2R,18R,22S,25R,28R,40S)-22-(2-amino-2-oxoethyl)-48-[2-O-(3-amino-2,3,6-trideoxy-3-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyloxy]-5,15-dichloro-2,18,32,35,37-pentahydroxy-19-[(N-methyl-D-leucyl)amino]-20,23,26,42,44-pentaoxo-7,13-dioxa-21,24,27,41,43-pentaazaoctacyclo[26.14.2.2(3,6).2(14,17).1(8,12).1(29,33).0(10,25).0(34,39)]pentaconta-3,5,8(48),9,11,14,16,29(45),30,32,34,36,38,46,49-pentadecaene-40-carboxylic acid

vancomycin

(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-[2-O-(3-amino-2,3,6-trideoxy-3-C-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyloxy]-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid

VANCOMYCIN

Vancomycin

Definitions

A complex glycopeptide from Streptomyces orientalis. It inhibits a specific step in the synthesis of the peptidoglycan layer in the Gram-positive bacteria Staphylococcus aureus and Clostridium difficile.

ID

http://purl.obolibrary.org/obo/CHEBI_28001

charge

0

database_cross_reference

PMID:16184232

PMID:15047516

PMID:15792257

PMID:11028184

PMID:17299012

PMID:15590714

PMID:22015328

CAS:1404-90-6

PMID:12019070

PMID:17027219

Patent:US3067099

PMID:18030187

PMID:22027450

MetaCyc:CPD-12245

Drug_Central:2807

PMID:13521912

PMID:21951032

KEGG:D00212

PMID:15465645

PMID:11688538

PMID:21109901

PMID:13370625

PMID:18361944

PMID:11980329

Beilstein:3132

PMID:21719238

PMID:18260149

PMID:19830166

Reaxys:3132

KEGG:C06689

PMID:21458937

PMID:16420976

PDBeChem:VAN

PMID:19107100

PMID:18462092

PMID:18159039

PMID:15081082

PMID:16183423

PMID:22124537

PMID:16596002

PMID:18983037

PMID:11408222

PMID:18817166

PMID:21664803

PMID:16720708

PMID:21466775

DrugBank:DB00512

PMID:17184835

PMID:12852813

KNApSAcK:C00016052

PMID:20956604

PMID:17594206

PMID:18162343

PMID:14605050

Wikipedia:Vancomycin

PMID:11864951

PMID:14702667

PMID:22011388

PMID:11886013

PMID:12541895

PMID:18582342

definition

A complex glycopeptide from Streptomyces orientalis. It inhibits a specific step in the synthesis of the peptidoglycan layer in the Gram-positive bacteria Staphylococcus aureus and Clostridium difficile.

formula

C66H75Cl2N9O24

has exact synonym

(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-[2-O-(3-amino-2,3,6-trideoxy-3-C-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyloxy]-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid

VANCOMYCIN

Vancomycin

has functional parent

http://purl.obolibrary.org/obo/CHEBI_47724

has role

http://purl.obolibrary.org/obo/CHEBI_33281

http://purl.obolibrary.org/obo/CHEBI_36047

http://purl.obolibrary.org/obo/CHEBI_76969

has_alternative_id

CHEBI:49941

CHEBI:9931

CHEBI:27276

has_obo_namespace

chebi_ontology

has_related_synonym

(2.2Sp,3.5Sa,2.6Sp)-O(4.2),C(3.4):C(5.4),O(4.6):C(3.5),C(2.7)-tricyclo[N-methyl-D-leucyl-3-chloro-(R)-beta-hydroxy-D-tyrosyl-L-asparaginyl-D-2-(4-{[2-O-(3-amino-2,3,6-trideoxy-3-C-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyl]oxy}phenyl)glycyl-D-2-(4-hydroxyphenyl)glycyl-3-chloro-(R)-beta-hydroxy-L-tyrosyl-L-2-(3,5-dihydroxyphenyl)glycine]

vancomicina

vancomicin

vancomycine

Vancocin

vancomycinum

(1S,2R,18R,22S,25R,28R,40S)-22-(2-amino-2-oxoethyl)-48-[2-O-(3-amino-2,3,6-trideoxy-3-methyl-alpha-L-lyxo-hexopyranosyl)-beta-D-glucopyranosyloxy]-5,15-dichloro-2,18,32,35,37-pentahydroxy-19-[(N-methyl-D-leucyl)amino]-20,23,26,42,44-pentaoxo-7,13-dioxa-21,24,27,41,43-pentaazaoctacyclo[26.14.2.2(3,6).2(14,17).1(8,12).1(29,33).0(10,25).0(34,39)]pentaconta-3,5,8(48),9,11,14,16,29(45),30,32,34,36,38,46,49-pentadecaene-40-carboxylic acid

vancomycin

id

CHEBI:28001

imported from

http://purl.obolibrary.org/obo/chebi.owl

in_subset

http://purl.oboInOwllibrary.org/oboInOwl/chebi#3_STAR

inchi

InChI=1S/C66H75Cl2N9O24/c1-23(2)12-34(71-5)58(88)76-49-51(83)26-7-10-38(32(67)14-26)97-40-16-28-17-41(55(40)101-65-56(54(86)53(85)42(22-78)99-65)100-44-21-66(4,70)57(87)24(3)96-44)98-39-11-8-27(15-33(39)68)52(84)50-63(93)75-48(64(94)95)31-18-29(79)19-37(81)45(31)30-13-25(6-9-36(30)80)46(60(90)77-50)74-61(91)47(28)73-59(89)35(20-43(69)82)72-62(49)92/h6-11,13-19,23-24,34-35,42,44,46-54,56-57,65,71,78-81,83-87H,12,20-22,70H2,1-5H3,(H2,69,82)(H,72,92)(H,73,89)(H,74,91)(H,75,93)(H,76,88)(H,77,90)(H,94,95)/t24-,34+,35-,42+,44-,46+,47+,48-,49+,50-,51+,52+,53+,54-,56+,57+,65-,66-/m0/s1

inchikey

MYPYJXKWCTUITO-LYRMYLQWSA-N

is conjugate base of

http://purl.obolibrary.org/obo/CHEBI_76842

label

vancomycin

mass

1449.25336

monoisotopicmass

1447.43020

notation

CHEBI:28001

prefLabel

vancomycin

smiles

CN[C@H](CC(C)C)C(=O)N[C@@H]1[C@H](O)c2ccc(Oc3cc4cc(Oc5ccc(cc5Cl)[C@@H](O)[C@@H]5NC(=O)[C@H](NC(=O)[C@@H]4NC(=O)[C@H](CC(N)=O)NC1=O)c1ccc(O)c(c1)-c1c(O)cc(O)cc1[C@H](NC5=O)C(O)=O)c3O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O[C@H]1C[C@](C)(N)[C@H](O)[C@H](C)O1)c(Cl)c2

subClassOf

http://purl.obolibrary.org/obo/CHEBI_24396

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Mapping To Ontology Source
http://purl.obolibrary.org/obo/CHEBI_28001 OBA SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 CHEBI SAME_URI
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http://purl.obolibrary.org/obo/CHEBI_28001 OBI SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 CCONT SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 DINTO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 EFO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 BERO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 DDSS SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 BIOMODELS SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 CIDO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 UPHENO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 CHEBI SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 PHIPO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 GENEPIO SAME_URI
http://purl.obolibrary.org/obo/CHEBI_28001 OBA LOOM
http://purl.obolibrary.org/obo/XCO_0000572 XCO LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 CHEBI LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D014640 RH-MESH LOOM
http://www.projecthalo.com/aura#Vancomycin AURA LOOM
http://purl.obolibrary.org/obo/HIO_0000280 HIO LOOM
http://purl.bioontology.org/ontology/ATC/S01AA28 ATC LOOM
http://purl.bioontology.org/ontology/CSP/0210-3379 CRISP LOOM
http://purl.obolibrary.org/obo/OMIT_0015474 OMIT LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0042313 OCHV LOOM
http://purl.bioontology.org/ontology/ATC/J01XA01 ATC LOOM
http://www.semanticweb.org/zchero/ontologies/2023/11/SepsisOntology#Vancomycin SEPON LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 DRON LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 PDRO LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 EUPATH LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 OBI LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 CCONT LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 DINTO LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 EFO LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 GO-PLUS LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 BERO LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 DDSS LOOM
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http://purl.obolibrary.org/obo/CHEBI_28001 CIDO LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 UPHENO LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 CHEBI LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 NIFSTD LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 PHIPO LOOM
http://purl.obolibrary.org/obo/CHEBI_28001 GENEPIO LOOM
http://purl.obolibrary.org/obo/CHEBI_49941 BIOMODELS LOOM
http://purl.bioontology.org/ontology/LNC/MTHU004271 LOINC LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#12892 OCHV LOOM
http://www.phoc.org.cn/pmo/class/PMO_00020941 PMAPP-PMO LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D09.400.420.925 RH-MESH LOOM
http://purl.bioontology.org/ontology/NDFRT/N0000148052 NDFRT LOOM
http://purl.obolibrary.org/obo/NCIT_C925 BERO LOOM
http://purl.bioontology.org/ontology/ATC/A07AA09 ATC LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C925 NCIT LOOM
http://purl.bioontology.org/ontology/LNC/LP16306-0 LOINC LOOM
http://purl.bioontology.org/ontology/RXNORM/11124 RXNORM LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/372735009 SNOMEDCT LOOM
http://purl.bioontology.org/ontology/CPT/80202 CPT LOOM
http://stirdf.jst.go.jp/id/200907006081877040 IOBC LOOM
http://localhost/plosthes.2017-1#984 PLOSTHES LOOM
https://go.drugbank.com/drugs/DB00512 MDM LOOM
http://purl.bioontology.org/ontology/RCD/eb7.. RCD LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D12.644.233.925 RH-MESH LOOM
https://github.com/sap218/ocimido/blob/master/ontology/ocimido.owl#OCIMIDO_00597 OCIMIDO LOOM
http://purl.obolibrary.org/obo/UPa_UPC06689 UPA LOOM
http://purl.jp/bio/4/id/200906015063070045 IOBC LOOM
http://purl.obolibrary.org/obo/MESH_D014640 BERO LOOM
http://purl.bioontology.org/ontology/PDQ/CDR0000039731 PDQ LOOM
http://purl.bioontology.org/ontology/MESH/D014640 MESH LOOM
http://www.co-ode.org/ontologies/galen#Vancomycin GALEN LOOM
http://purl.bioontology.org/ontology/VANDF/4019967 VANDF LOOM
http://purl.obolibrary.org/obo/ARO_0000028 ARO LOOM
http://purl.bioontology.org/ontology/SNMI/C-522A0 SNMI LOOM
http://purl.jp/bio/10/gmo/GMO_002320 GMO LOOM
http://purl.bioontology.org/ontology/NDDF/004866 NDDF LOOM