Score

A measure that permits the ranking of entities. Directly encodes for the "score" column in GFF3, GTF and GVF files; if the actual scoring algorithm is known, then "Phred Score" might be used to encode for the values of the "score" column in GVF files. The class can encapsule information of the "score-method" pragma in GVF files. For VCF files, the subclasses "Phred Score" and "Conditional Genotype Quality" should be used. GFVO's "Score" and "Phred Score" cannot be defined as equivalent to the Sequence Ontology terms "score" (SO:0001685) and "quality_value" (SO:0001686) due to differences in inheritance between the two ontology implementations. GFVO defines "Phred Score" as a subclass of "Score", but the Sequence Ontology defines "score" as a sibling of "quality_value".

https://www.codamono.com/biointerchange/gfvo#Score

A measure that permits the ranking of entities. Directly encodes for the "score" column in GFF3, GTF and GVF files; if the actual scoring algorithm is known, then "Phred Score" might be used to encode for the values of the "score" column in GVF files. The class can encapsule information of the "score-method" pragma in GVF files. For VCF files, the subclasses "Phred Score" and "Conditional Genotype Quality" should be used. GFVO's "Score" and "Phred Score" cannot be defined as equivalent to the Sequence Ontology terms "score" (SO:0001685) and "quality_value" (SO:0001686) due to differences in inheritance between the two ontology implementations. GFVO defines "Phred Score" as a subclass of "Score", but the Sequence Ontology defines "score" as a sibling of "quality_value".

http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41

http://www.ensembl.org/info/website/upload/gff.html

http://samtools.github.io/hts-specs/VCFv4.2.pdf

http://sequenceontology.org/resources/gvf.html

http://samtools.github.io/hts-specs/VCFv4.1.pdf

http://sequenceontology.org/resources/gff3.html

Score

Score

Score

http://en.wikipedia.org/wiki/Score_(statistics)

https://www.codamono.com/biointerchange/gfvo#Object