GBOL

Last uploaded: August 9, 2019
Preferred Name

NASequence

Synonyms
Definitions

Represents a physical nucleotide sequence Physical nucleotide sequence can be a DNA or RNA molecule being either single or double stranded. SequenceFeatureCore #* The topology of the sequence (linear, circular) topology type::Topology?; #* The set of features annotating the sequence feature @:NAFeature*; #* The translation table of the nucleotide sequence, if not present its inherited from the parent NASequence translTable xsd:PositiveInteger?; #* Indicates that this sequence is obtained from a virus or phage that is integrated into the genome of another organism proviral xsd:boolean?; #* If a clone library was used for sequencing, the sequence can originate from one or more clones clone xsd:string*; #* If a clone library was used for sequencing, specify the clone library cloneLib xsd:string?; #* Indicates if the sequence has undergone somatic rearrangement as part of an adaptive immune response. If equal to false it is the un-rearranged sequence that was inherited from the parental germ line. If equal to true the sequence has undergone somatic rearrangement as part of an adaptive immune response. If not defined it is not applicable to the sequence or unknown. rearranged xsd:boolean?; #* If this NA object is integrated into another NA object, for example a phage genome which is integrated into a bacterial genome or a plasmid which is integrated into a yeast genome. integratedInto @:NASequence?; #* Indicates that this sequence from the macro-nuclear DNA from an organism which undergoes chromosomal differentiation between macro-nuclear and micro-nuclear stages. macronuclear xsd:boolean?; #* Expression feature expression @:Expression*;

ID

http://gbol.life/0.1/NASequence

comment

Represents a physical nucleotide sequence

Physical nucleotide sequence can be a DNA or RNA molecule being either single or double stranded.

SequenceFeatureCore

#* The topology of the sequence (linear, circular) topology type::Topology?; #* The set of features annotating the sequence feature @:NAFeature*; #* The translation table of the nucleotide sequence, if not present its inherited from the parent NASequence translTable xsd:PositiveInteger?; #* Indicates that this sequence is obtained from a virus or phage that is integrated into the genome of another organism proviral xsd:boolean?; #* If a clone library was used for sequencing, the sequence can originate from one or more clones clone xsd:string*; #* If a clone library was used for sequencing, specify the clone library cloneLib xsd:string?; #* Indicates if the sequence has undergone somatic rearrangement as part of an adaptive immune response. If equal to false it is the un-rearranged sequence that was inherited from the parental germ line. If equal to true the sequence has undergone somatic rearrangement as part of an adaptive immune response. If not defined it is not applicable to the sequence or unknown. rearranged xsd:boolean?; #* If this NA object is integrated into another NA object, for example a phage genome which is integrated into a bacterial genome or a plasmid which is integrated into a yeast genome. integratedInto @:NASequence?; #* Indicates that this sequence from the macro-nuclear DNA from an organism which undergoes chromosomal differentiation between macro-nuclear and micro-nuclear stages. macronuclear xsd:boolean?; #* Expression feature expression @:Expression*;

definition

Represents a physical nucleotide sequence

Physical nucleotide sequence can be a DNA or RNA molecule being either single or double stranded.

SequenceFeatureCore

#* The topology of the sequence (linear, circular) topology type::Topology?; #* The set of features annotating the sequence feature @:NAFeature*; #* The translation table of the nucleotide sequence, if not present its inherited from the parent NASequence translTable xsd:PositiveInteger?; #* Indicates that this sequence is obtained from a virus or phage that is integrated into the genome of another organism proviral xsd:boolean?; #* If a clone library was used for sequencing, the sequence can originate from one or more clones clone xsd:string*; #* If a clone library was used for sequencing, specify the clone library cloneLib xsd:string?; #* Indicates if the sequence has undergone somatic rearrangement as part of an adaptive immune response. If equal to false it is the un-rearranged sequence that was inherited from the parental germ line. If equal to true the sequence has undergone somatic rearrangement as part of an adaptive immune response. If not defined it is not applicable to the sequence or unknown. rearranged xsd:boolean?; #* If this NA object is integrated into another NA object, for example a phage genome which is integrated into a bacterial genome or a plasmid which is integrated into a yeast genome. integratedInto @:NASequence?; #* Indicates that this sequence from the macro-nuclear DNA from an organism which undergoes chromosomal differentiation between macro-nuclear and micro-nuclear stages. macronuclear xsd:boolean?; #* Expression feature expression @:Expression*;

prefixIRI

NASequence

prefLabel

NASequence

propertyDefinitions

#* The topology of the sequence (linear, circular) topology type::Topology?; #* The set of features annotating the sequence feature @:NAFeature*; #* The translation table of the nucleotide sequence, if not present its inherited from the parent NASequence translTable xsd:PositiveInteger?; #* Indicates that this sequence is obtained from a virus or phage that is integrated into the genome of another organism proviral xsd:boolean?; #* If a clone library was used for sequencing, the sequence can originate from one or more clones clone xsd:string*; #* If a clone library was used for sequencing, specify the clone library cloneLib xsd:string?; #* Indicates if the sequence has undergone somatic rearrangement as part of an adaptive immune response. If equal to false it is the un-rearranged sequence that was inherited from the parental germ line. If equal to true the sequence has undergone somatic rearrangement as part of an adaptive immune response. If not defined it is not applicable to the sequence or unknown. rearranged xsd:boolean?; #* If this NA object is integrated into another NA object, for example a phage genome which is integrated into a bacterial genome or a plasmid which is integrated into a yeast genome. integratedInto @:NASequence?; #* Indicates that this sequence from the macro-nuclear DNA from an organism which undergoes chromosomal differentiation between macro-nuclear and micro-nuclear stages. macronuclear xsd:boolean?; #* Expression feature expression @:Expression*;

subDomain

SequenceFeatureCore

subClassOf

http://gbol.life/0.1/Sequence

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http://purl.obolibrary.org/obo/MS_1001343 MS LOOM