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Fission Yeast Phenotype Ontology
| Preferred Name | promoter | |
| Synonyms |
INSDC_feature:regulatory INSDC_qualifier:promoter promoter sequence |
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| Definitions |
A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the core transcription machinery. A region (DNA) to which RNA polymerase binds, to begin transcription. This term is mapped to MGED. Do not obsolete without consulting MGED ontology. The region on a DNA molecule involved in RNA polymerase binding to initiate transcription. Moved from is_a: SO:0001055 transcriptional_cis_regulatory_region as per request from GREEKC initiative in August 2020. Merged with RNA_polymerase_promoter (SO:0001203) Aug 2020. Moved up one level from is_a CRM (SO:0000727) to is_a transcriptional_cis_regulatory_region (SO:0001055) as part of the GREEKC work January 2021. Pascale Gaudet from Gene Ontology pointed out that CRM can be located upstream of the promoter and therefore cannot include the promoter. |
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| ID |
http://purl.obolibrary.org/obo/SO_0000167 |
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| comment |
This term is mapped to MGED. Do not obsolete without consulting MGED ontology. The region on a DNA molecule involved in RNA polymerase binding to initiate transcription. Moved from is_a: SO:0001055 transcriptional_cis_regulatory_region as per request from GREEKC initiative in August 2020. Merged with RNA_polymerase_promoter (SO:0001203) Aug 2020. Moved up one level from is_a CRM (SO:0000727) to is_a transcriptional_cis_regulatory_region (SO:0001055) as part of the GREEKC work January 2021. Pascale Gaudet from Gene Ontology pointed out that CRM can be located upstream of the promoter and therefore cannot include the promoter.
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| database_cross_reference | ||
| definition |
A regulatory_region composed of the TSS(s) and binding sites for TF_complexes of the core transcription machinery. A region (DNA) to which RNA polymerase binds, to begin transcription.
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| has_broad_synonym |
INSDC_feature:regulatory
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| has_exact_synonym |
INSDC_qualifier:promoter promoter sequence
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| has_obo_namespace |
sequence
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| id |
SO:0000167
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| in_subset | ||
| label |
promoter
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| notation |
SO:0000167
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| prefLabel |
promoter
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| subClassOf |
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