EDAM Bioimaging Ontology

Last uploaded: March 3, 2020
Preferred Name

Light microscopy
Synonyms

Optical microscopy

Light microscope

Optical microscope

Definitions

a list of technique to add is to be found here: https://docs.google.com/document/d/1amTDpRLmoER8pA4IlGMChFfTHzHmMCFcaqUA1xQBd3k/edit Light microscopy regroups all techniques in microscopy using light to illuminate and produce an image of a sample.

ID

http://edamontology.org/topic_3385

comment

a list of technique to add is to be found here: https://docs.google.com/document/d/1amTDpRLmoER8pA4IlGMChFfTHzHmMCFcaqUA1xQBd3k/edit

hasDefinition

Light microscopy regroups all techniques in microscopy using light to illuminate and produce an image of a sample.

hasExactSynonym

Optical microscopy

hasRelatedSynonym

Light microscope

Optical microscope

inSubset

bioimaging

edam

topics

label

Light microscopy

prefixIRI

topic_3385

prefLabel

Light microscopy

Related term

Light microscope

Optical microscope

seeAlso

https://en.wikipedia.org/wiki/Optical_microscope

http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17995

subClassOf

http://edamontology.org/topic_Microscopy

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A formal representation of the knowledge within the domain of Isotopes for Food Science 2
AdaLab ontology 2
Adverse Event Reporting Ontology 1
AGRonomy Ontology 7
Allergy Ontology 2
Allotrope Merged Ontology Suite 11
Alzheimer Disease Map Ontology 1
Alzheimer's Disease Ontology 4
An ontology for experimental actions 1
An Ontology for Indian Biodiversity Knowledge Management 1
An Ontology for integration and interoperability of multi-aspect data of Protein food production chains 1
An ontology of core ecological entities 1
Anatomical Therapeutic Chemical Classification 1
Ancient Poet Resource Ontology 1
APA Neuro Cluster 3
APA Statistical Cluster 1
Apollo Structured Vocabulary 2
Archana Patel 1
Arctic Data Center Academic Disciplines Ontology 1
Artificial Intelligence 14
Artificial Intelligence Ontology 14
Artificial Intelligence Rheumatology Consultant System Ontology 1
Atherosclerotic Cerebrovascular Disease Ontology 1
Atlas Ontology Model 2
Bacterial interlocked Process ONtology 1
Beta Cell Genomics Ontology 3
BIBFRAME 2.0 1
Bilingual Ontology of Alzheimer's Disease and Related Diseases 8
BioAssay Ontology 24
Biodiversity Ontology 1
Biolink Model 1
Biological and Environmental Research Ontology 27
Biological Collections Ontology 1
Biological Imaging Methods Ontology 15
Biological Observation Matrix Ontology 4
Biomedical Image Ontology 9
Biomedical Informatics Research Network Project Lexicon 3
Biomedical Research Integrated Domain Group Model 1
Biomedical Resource Ontology 6
BioMedical Study Lifecycle Management 1
Biomedical Topics 7
BioModels Ontology 5
BioPAX Ontology of Biological Pathways 1
BioPortal Metadata Ontology 1
BioTop Ontology 1
Bleeding History Phenotype Ontology 2
Bone and Cartilage Tissue Engineering Ontology 4
Brain-Computer Interaction (BCI) Ontology 1
BrainTeaser Ontology (BTO) 1
Breast Cancer Grading Ontology 1
Breast cancer screening recommendation ontology 1
Bricks ontology 1
Brinell Test Ontology-EMMO 8
Brinell Test Ontology-PROVO 5
C. elegans Gross Anatomy Vocabulary 1
Cancer Research and Management ACGT Master Ontology 4
CARRE Risk Factor ontology 1
Cell Behavior Ontology 2
Cell Culture Ontology 4
Cell Cycle Ontology 1
Cell Line Ontology 1
Cell Ontology 1
Cellular microscopy phenotype ontology 2
Cerebrotendinous Xanthomatosis Ontology 3
Chemical Information Ontology 2
Chemical Methods Ontology 22
Children's Health Exposure Analysis Resource 16
Chromatin Regulator Ontology 1
Chronic Kidney Disease Ontology 1
CIDOC Conceptual Reference Model 2
Cigarette Smoke Exposure Ontology 23
Clinical MetaData Ontology 1
Clinical Trials Ontology - Neurodegenerative Diseases 3
Coding Symbols for a Thesaurus of Adverse Reaction Terms 1
CODO: an Ontology for collection and analysis of COviD-19 data 1
Cognitive Atlas Ontology 6
Combined Ontology for Inflammatory Diseases 2
Combined Phenotype Ontology 3
Computational Neuroscience Ontology 7
Computer Assisted Brain Injury Rehabilitation Ontology 1
Computer Cluster 1
computer network 1
Computer Retrieval of Information on Scientific Projects Thesaurus 26
Computer-Based Patient Record Ontology 1
Content Archive Resource Exchange Lexicon 5
COVID-19 Ontology 1
Covid19 Impact on Banking Ontology 1
Cryo Electron Microscopy 2
Data Science Education Ontology 12
DATACITE V4.4 1
Dataset processing 9
DCMI Type Vocabulary 1
DECIDE ONTOLOGY 1
Dementia-Related Agitation Non-Pharmacological Treatment Ontology 1
Dementia-Related Emotional And Mood Disturbance Non-Pharmacological Treatment Ontology 1
Dementia-Related Psychotic Symptoms Non-Pharmacological Treatment Ontology 1
Dependency Layered Ontology for Radiation Oncology 1
Dermatology Lexicon 1
Devices, Experimental scaffolds and Biomaterials Ontology 2
DICOM Controlled Terminology 15
Digital medicine Outcomes Value Set (DOVeS) Ontology 2
Disorders cluster 2
Drug Interaction and Evidence Ontology 1
Drug Interaction Knowledge Base Ontology 1
DSIP8REFUGEE 1
DSMZ Digital Diversity Ontology 3
Eagle-I Research Resource Ontology 33
Early Pregnancy Ontology 1
ecosim ontology 2
EDAM - The data analysis and management ontology 42
Electrocardiography Ontology 8
Electronic Care Plan 1
eLTER Controlled Lists 1
Emergency care ontology 1
EMIF-AD ontology 1
eNanoMapper 28
Environment Ontology 6
Environmental conditions, treatments and exposures ontology 4
Epigenome Ontology 7
Epilepsy and Seizure Ontology 1
Epilepsy Ontology 3
Epilepsy Syndrome Seizure Ontology 1
EpilepsyOntology 4
Evidence Graph Ontology 1
Experimental Factor Ontology 4
Exposure Ontology 2
FAIR Genomes 2
FamPlex 1
Fanconi Anemia Ontology 1
FISH Archaeological Sciences Thesaurus 2
Fission Yeast Phenotype Ontology 1
Flora Phenotype Ontology 4
FlyBase Controlled Vocabulary 1
FNS-Harmony 1
Food Interactions with Drugs Evidence Ontology 1
Foundational Model of Anatomy 1
Friend of a Friend Vocabulary 1
FuTRES Ontology of Vertebrate Traits 3
Galen Ontology 7
GBOL 1
Gender, Sex, and Sexual Orientation Ontology 6
General Formal Ontology for Biology 1
Generative AI Ontology 1
Generic Dataset Metadata Template Vocabulary 2
Genomic Epidemiology Application Ontology 1
Geographical Entity Ontology 1
Global Code Book Ontology 1
GlycoConjugate Ontology 1
GlycoRDF 3
GO FAIR M4M 1
Guideline Provenance 2
Health Level Seven Reference Implementation Model, Version 3 11
Healthcare Common Procedure Coding System 1
Healthcare Monitoring and Emergency Response Ontology 3
Heart Failure Ontology 2
HHEAR Properties 7
Hierarchical Event Descriptors 3
HierarchicalDMProcessOnto 2
Homeostasis imbalance process ontology 12
Host Pathogen Interactions Ontology 1
HuBMAP Research Attributes Value Set 3
Human Health Exposure Analysis Resource 15
Human Interaction Network Ontology 2
Human Physiology Simulation Ontology 7
Human-Aware Science Ontology 7
Hymenoptera Anatomy Ontology 1
Hypertension Ontology 2
Image and Data Quality Assessment Ontology 3
Imaging Biomarker Ontology 5
Immunogenetics Ontology 1
In Silico Methodologies Ontology for MAATrica metric 4
In Vitro Methodologies Ontology for MAATrica metric 1
In Vivo Methodologies Ontology for MAATrica metric 1
Indian Biodiversity Ontology 1
Indian Terrorism Ontology 1
IndianBiodiversity 1
Infectious Diseases and Antimicrobial Resistance 1
Influenza Ontology 2
Information Artifact Ontology 1
Informed Consent Ontology 2
Integration and Implementation Sciences Vocabulary 1
Intelligence Task Ontology 62
Interaction Network Ontology 2
Interlinking Ontology for Biological Concepts 43
International Classification for Nursing Practice 1
International Classification for Patient Safety 1
International Classification of Diseases, Version 10 1
International Classification of Diseases, Version 10 - Clinical Modification 1
International Classification of Diseases, Version 10 - Procedure Coding System 1
International Classification of Diseases, Version 9 - Clinical Modification 1
International Classification of Primary Care - 2 PLUS 2
Invasion Biology Ontology 1
ISO-15926-2_2003_annotations 1
ISO-15926-2_2003_entityMembership 1
ISO-15926-2_2003_inverseRoles 1
ISO-15926-2_2003_oil 1
Just Enough Results Model Ontology 5
KB_Bio_101 12
Kidney Tissue Atlas Ontology 1
Kinetic Simulation Algorithm Ontology 2
Knowledge Graph Change Language 1
Life Ontology 1
Liver Case Ontology (LiCO) 1
Loggerhead Nesting Ontology 1
Logical Observation Identifier Names and Codes 23
Magnetic Resonance Dataset Acquisition Ontology 2
Mammalian Feeding Muscle Ontology 2
Mapping of Drug Names and MeSH 2022 18
Mapping of Epilepsy Ontologies 4
Mass Spectrometry Ontology 4
Master Drug Data Base Clinical Drugs 1
MaterialsMine Ontology 10
Measurement Method Ontology 9
Medical Action Ontology 4
Medical Dictionary for Regulatory Activities Terminology (MedDRA) 8
Medical Error Ontology 1
Medical image simulation 2
Medical Subject Headings 30
MedlinePlus Health Topics 3
Menelas Project Top-Level Ontology 1
Mental State Assessment 2
metaBUS controlled vocabulary for organizational and applied psychology research 1
MFO Mental Disease Ontology 1
MIAPA Ontology 2
Microarray and Gene Expression Data Ontology 2
Minimal Information about any Sequence Ontology 2
Minimal Standard Terminology of Digestive Endoscopy 2
Model Card Report Ontology 8
Modern Science Ontology 6
Molecular Interaction Map 1
Molecular Interactions 11
Mouse Pathology Ontology 1
Multiple sclerosis ontology 1
Myocardial Infarction Ontology 6
MyOntoServiceFull_FallDetection 1
Nanbyo Disease Ontology 1
NanoParticle Ontology 19
National Cancer Institute Thesaurus 65
National Center for Biotechnology Information (NCBI) Organismal Classification 2
National Drug Data File 1
National Drug File - Reference Terminology 1
Neomark Oral Cancer Ontology, version 3 1
Neural ElectroMagnetic Ontology 3
NeuroBridge Ontology 2
Neurodegenerative Disease Data Ontology 1
NeuroMorpho.Org brain region ontologies 1
Neuron Phenotype Ontology 2
Neuropsychological Integrative Ontology 4
Neuroscience Information Framework (NIF) Dysfunction Ontlogy 6
Neuroscience Information Framework (NIF) Standard Ontology 16
Neuroscience Information Framework (NIF) Subcellular Ontology 1
Next Generation Biobanking Ontology 2
NIDM-Results 2
NIST Genome Editing Lexicon 1
NLighten Ontology 2
NMDC Ontology 7
Obstetric and Neonatal Ontology 8
Ocular Immune-Mediated Inflammatory Diseases Ontology 1
Online Mendelian Inheritance in Man 4
OntoDM-core/algorithms 1
Ontology for Biobanking 3
Ontology for Biomedical Investigations 8
Ontology for Drug Discovery Investigations 1
Ontology for ELEctronic tool for Clinicians, Trainers and Researchers In Child Abuse 1
Ontology for Generic Dataset Metadata Template 1
Ontology for MicroRNA Target 25
Ontology for Modeling and Representation of Social Entities 1
Ontology for Newborn Screening Follow-up and Translational Research 3
Ontology for Nutritional Epidemiology 11
Ontology for Nutritional Studies 4
Ontology for Representing CDM Semantics 1
Ontology of Adverse Events 1
Ontology of Alternative Medicine, French 1
Ontology of Amyotrophic Lateral Sclerosis, all modules 1
Ontology of Arthropod Circulatory Systems 1
Ontology of Biological and Clinical Statistics 3
Ontology of Biological Attributes 4
Ontology of Consumer Health Vocabulary 52
Ontology of Core Data Mining Entities 4
Ontology of Data Mining Investigations 1
Ontology of Drug Neuropathy Adverse Events 1
Ontology of Genes and Genomes 1
Ontology of Host-Pathogen Interactions 3
Ontology of Microbial Phenotypes 1
Ontology of Nuclear Toxicity 10
Ontology of Organizational Structures of Trauma centers and Trauma systems 1
Ontology of Physics for Biology 1
Ontology of Pneumology 1
Ontology of Precision Medicine and Investigation 1
Ontology of units of Measure 2
Ontology of Vaccine Adverse Events 1
OntoPsychia, social module 1
Optimization Algorithm Benchmarking Ontology 1
OSIRIS-REx Analytical Technique 6
PaN Experimental technique 11
Parkinson and Movement Disorder Ontology 1
Parkinson's Disease Ontology 1
Pathway Terminology System 1
PatientSafetyOntology 1
Pediatric Terminology 1
Performance Summary Display Ontology 4
Pharmacogenomic Relationships Ontology 3
Phenotypic Quality Ontology 4
Phylogenetic Ontology 1
Physical Activity Ontology 1
Physical Medicine and Rehabilitation 3
Physician Data Query 15
Physico-Chemical Methods and Properties 13
Physico-Chemical Process 1
Pipeline Patterns Ontology 2
Placental Investigative Technique 6
Planarian Phenotype Ontology 1
Plant Experimental Assay Ontology 3
Plant Gall Ontology 1
Plant Phenology Ontology 3
PLOS Thesaurus 35
Pneumonia Diagnosis Ontology 1
Portfolio Management Application 6
postpartum depression ontology 2
Pre-eclampsia Ontology 1
Precision Medicine Ontology 6
Presence Ontology 1
Probabilistic Knowledge Assembly Ontology 1
Process Chemistry Ontology 1
Prompt Engineering Ontology 4
Prostate Cancer Ontology 2
Protein-ligand interaction ontology 1
Proteomics Data and Process Provenance Ontology 1
Psychology Ontology 11
Psychometric Ontology of Experiences and Measures 4
Radiation Biology Ontology 5
Radiation Oncology Ontology 5
Radiology Lexicon 18
Radiomics Ontology 12
RADx Data Hub Metadata Ontology 2
RDL 1
Read Clinical Terminology Version 2 6
Read Codes, Clinical Terms Version 3 (CTV3) 15
REGN_BRO 6
Relations Ontology 1
REPRODUCE-ME 5
Research Network and Patient Registry Inventory Ontology 2
Reusable Biodiversity Ontology 1
Robert Hoehndorf Version of MeSH 66
RxNORM 1
Sample Processing and Separation Techniques Ontology 2
Santa Barbara Coastal Observation Ontology 2
Schema.org core and all extension vocabularies 2
Semantic DICOM Ontology 1
Semantic Types Ontology 1
Semantic Web for Earth and Environment Technology Ontology 27
Semanticscience Integrated Ontology 4
Sepsis Ontology 3
Sickle Cell Disease Ontology 3
Sleep Domain Ontology 1
SmartPITeS Proyect Ontology for Complex Chronic Patients 1
SNOMED CT 23
social determinants of health ontology-TaoLab 1
Software Ontology 10
Space Life Sciences Ontology 5
Spinal Cord Injury Ontology 1
Statistics Ontology 4
STO 1
Study Cohort Ontology 7
Subcellular Anatomy Ontology 2
suicideonto 2
Systematized Nomenclature of Medicine, International Version 1
Systems Biology Ontology 4
Taxonomy for Rehabilitation of Knee Conditions 5
Terminological and Ontological Knowledge Resources Ontology 3
terms4FAIRskills 2
test1 1
TEST_A 1
The Biblioteko Ontology 2
The Biomarker Ontology 6
The Data Use Ontology 2
The Drug-Drug Interactions Ontology 1
The Ecosystem Ontology 1
The Extensible Observation Ontology 2
The FoodOn Food Ontology 3
The Ontology for Biomedical Investigation based Inner Ear Electrophysiology 10
The Prescription of Drugs Ontology 9
The Stroke Ontology 1
Thesaurus for long-term ecological research, monitoring, experiments 13
Thyroid Cancer Ontology 4
Time Event Ontology 1
Toxic Process Ontology 1
UHC Metadata 1
Vaccine Ontology 2
Veterans Health Administration National Drug File 1
VEuPathDB Ontology 2
Viral Disease Ontology Trunk 2
Vital Sign Ontology 1
VIVO Ontology for Researcher Discovery 1
VIVO-Integrated Semantic Framework 1
VODANATERMS 1
WEAVE: Wind Energy ActiVitiEs 1
Web Annotation Ontology 1
Web-Service Interaction Ontology 2
Whole-cell modeling ontology 1
WikiPathways 1
Women with Epilepsy of Child-bearing Age Ontology 5
World Health Organization (WHO) Adverse Reaction Terminology 1
Xenopus Phenotype Ontology 1
Zebrafish Experimental Conditions Ontology 1
Zebrafish Phenotype Ontology 4
ZonMW COVID-19 4
ZonMw Generic Terms 1
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