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Cell Line Ontology
Last uploaded:
June 28, 2024
Acronym | CLO |
Visibility | Public |
Description | The Cell Line Ontology (CLO) is a community-based ontology in domain of biological cell lines with a focus on permanent cell lines from culture collections. Upper ontology structures that frame the skeleton of CLO include Basic Formal Ontology and Relation Ontology. Cell lines contained in CLO are associated with terms from other ontologies such as Cell Type Ontology, NCBI Taxonomy, and Ontology for Biomedical Investigation. A common design pattern for the cell line is used to model cell lines and their attributes, the Jurkat cell line provides ane xample. Currently CLO contains over 36,000 cell line entries obtained from ATCC, HyperCLDB, Coriell, and bymanual curation. The cell lines are derived from 194 cell types, 656 anatomical entries, and 217 organisms. The OWL-based CLO is machine-readable and can be used in various applications. |
Status | Production |
Format | OWL |
Contact | Oliver He, yongqunh@med.umich.edu Sirarat Sarntivijai, siiraa@umich.edu |
Categories | All Organisms, Anatomy, Biological Process, Biomedical Resources, Cell, Experimental Conditions, Phenotype, Taxonomic Classification, Vocabularies |
Groups | OBO Foundry |
Version | Released | Uploaded | Downloads |
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2.1.188 (Parsed, Indexed, Metrics, Annotator) | 06/28/2024 | 06/28/2024 | OWL | CSV | RDF/XML | Diff |
2.1.178 (Archived) | 03/21/2022 | 03/21/2022 | OWL | Diff |
2.1.162 (Archived) | 02/10/2019 | 02/10/2019 | OWL | Diff |
2.1.142 (Archived) | 01/17/2019 | 01/17/2019 | OWL | Diff |
2.1.141 (Archived) | 10/15/2018 | 10/15/2018 | OWL | Diff |
2.1.135 (Archived) | 02/07/2018 | 02/07/2018 | OWL | Diff |
2.1.106 (Archived) | 05/31/2017 | 05/31/2017 | OWL | Diff |
2.1.104 (Archived) | 05/30/2017 | 05/30/2017 | OWL | Diff |
2.1.99 (Archived) | 05/23/2017 | 05/23/2017 | OWL | Diff |
2.1.98 (Archived) | 05/21/2017 | 05/21/2017 | OWL | Diff |
2.1.91 (Archived) | 04/21/2017 | 04/21/2017 | OWL | Diff |
2.1.90 (Archived) | 02/06/2017 | 02/06/2017 | OWL | Diff |
2.1.83 (Archived) | 08/31/2016 | 08/31/2016 | OWL | Diff |
2.1.83 (Archived) | 07/07/2016 | 07/07/2016 | OWL | Diff |
2.1.79 (Archived) | 05/04/2016 | 05/04/2016 | OWL | Diff |
2.1.76 (Archived) | 04/30/2016 | 04/30/2016 | OWL | Diff |
2.1.67 (Archived) | 04/27/2016 | 04/27/2016 | OWL | Diff |
2.1.66 (Archived) | 04/25/2016 | 04/25/2016 | OWL | Diff |
2.1.65 (Archived) | 04/22/2016 | 04/22/2016 | OWL | Diff |
2.1.64 (Archived) | 04/21/2016 | 04/21/2016 | OWL | Diff |
2.1.63 (Archived) | 10/13/2015 | 10/13/2015 | OWL | Diff |
2.1.63 (Archived) | 08/20/2015 | 08/20/2015 | OWL | Diff |
2.1.64 (Archived) | 08/19/2015 | 04/25/2015 | OWL | Diff |
2.1.59 (Archived) | 11/06/2013 | 02/21/2014 | OWL | Diff |
2.1.59 (Archived) | 11/06/2013 | 02/21/2014 | OWL | Diff |
2.1.59 (Archived) | 11/06/2013 | 02/20/2014 | OWL |
2.1.59 (Archived) | 11/06/2013 | 02/20/2014 | OWL |
2.1.52 (Archived) | 11/06/2013 | 11/06/2013 | OWL | Diff |
2.1.52 (Archived) | 10/21/2013 | 10/21/2013 | OWL | Diff |
2.1.52 (Archived) | 10/21/2013 | 10/21/2013 | OWL | Diff |
2.1.52 (Archived) | 10/10/2013 | 10/10/2013 | OWL |
2.1.52 (Archived) | 08/05/2013 | 08/05/2013 | OWL |
2.1.52 (Archived) | 07/04/2013 | 07/04/2013 | OWL |
2.1.46 (Archived) | 06/19/2013 | 06/19/2013 | OWL |
2.1.44 (Archived) | 06/18/2013 | 06/18/2013 | OWL |
2.1.43 (Archived) | 06/16/2013 | 06/16/2013 | OWL |
2.1.42 (Archived) | 06/13/2013 | 06/13/2013 | OWL |
2.1.38 (Archived) | 06/12/2013 | 06/12/2013 | OWL |
2.1.33 (Archived) | 06/04/2013 | 06/04/2013 | OWL |
2.1.32 (Archived) | 05/23/2013 | 05/23/2013 | OWL |
2.1.30 (Archived) | 05/06/2013 | 05/06/2013 | OWL |
2.1.29 (Archived) | 04/26/2013 | 04/26/2013 | OWL |
2.1.28 (Archived) | 04/07/2013 | 04/26/2013 | OWL |
2.1.28 (Archived) | 04/07/2013 | 04/07/2013 | OWL |
unknown (Archived) | 04/06/2013 | 04/06/2013 | OWL |
2.1.28 (Archived) | 03/29/2013 | 03/29/2013 | OWL |
2.1.25 (Archived) | 03/28/2013 | 03/28/2013 | OWL |
2.1.24 (Archived) | 03/27/2013 | 03/27/2013 | OWL |
2.1.22 (Archived) | 03/22/2013 | 03/22/2013 | OWL |
2.1.19 (Archived) | 03/15/2013 | 03/15/2013 | OWL |
2.1.05 (Archived) | 02/26/2013 | 02/26/2013 | OWL |
2.1.03 (Archived) | 01/11/2013 | 01/11/2013 | OWL |
2.1.03 (Archived) | 01/10/2013 | 01/10/2013 | OWL |
2.1.04 (Archived) | 11/16/2012 | 11/16/2012 | OWL |
unknown (Archived) | 11/15/2012 | 11/15/2012 | OWL |
2.1.04 (Archived) | 09/20/2012 | 09/20/2012 | OWL |
2.1.03 (Archived) | 09/20/2012 | 09/20/2012 | OWL |
2.0.36 (Archived) | 09/20/2012 | 09/20/2012 | OWL |
2.0.36 (Archived) | 07/13/2012 | 07/23/2012 | OWL |
2.0.36 (Archived) | 07/13/2012 | 07/19/2012 | OWL |
2.0.36 (Archived) | 07/13/2012 | 07/13/2012 | OWL |
2.0.35 (Archived) | 07/13/2012 | 07/13/2012 | OWL |
2.0.35 (Archived) | 07/13/2012 | 07/12/2012 | OWL |
2.0.27 (Archived) | 03/10/2011 | 03/10/2011 | OWL |
2.0.26 (Archived) | 03/09/2011 | 03/10/2011 | OWL |
1 (Archived) | 02/29/2008 | 07/08/2009 | OWL |
more... |
No views of CLO available
Classes | 43,327 |
Individuals | 26 |
Properties | 250 |
Maximum depth | 35 |
Maximum number of children | 21,698 |
Average number of children | 13 |
Classes with a single child | 1,690 |
Classes with more than 25 children | 84 |
Classes with no definition | 8,350 |
Jump to:
Preferred Name | A9 cell | |
Synonyms |
A9 |
|
Definitions |
disease: hybridoma |
|
ID |
http://purl.obolibrary.org/obo/CLO_0001619 |
|
comment |
disease: hybridoma
|
|
alternative term |
A9
|
|
is_specified_input_of | ||
label |
A9 cell
|
|
participates_in | ||
prefixIRI |
CLO:0001619
|
|
prefLabel |
A9 cell
|
|
see also |
ATCC: CRL-1811
|
|
subClassOf |
Add comment
Delete | Subject | Author | Type | Created |
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No notes to display |
Create mapping
Mapping To | Ontology | Source |
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http://purl.jp/bio/4/id/200906001606728649 | IOBC | LOOM |
http://purl.obolibrary.org/obo/BTO_0002887 | DTO | LOOM |
http://purl.obolibrary.org/obo/BTO_0002887 | BTO | LOOM |
Notes
Filter:
Add NCBO Web Widgets to your site for CLO
Widget type | Widget demonstration |
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Step 2: Follow the Instructions
For more help visit NCBO Widget Wiki |
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Example 1 (start typing the class name to get its full URI)
Example 2 (get the ID for a class) Example 3 (get the preferred name for a class) Step 2: Follow the Instructions
For more help visit NCBO Widget Wiki |
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Step 2: Follow the InstructionsCopy the code below and paste it to your HTML page <iframe frameborder="0" src="/widgets/visualization?ontology=CLO&class=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCLO_0021558&apikey=YOUR_API_KEY"></iframe> For more help visit NCBO Widget Wiki |
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Step 2: Follow the InstructionsCopy the code below and paste it to your HTML page <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css"> <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script> <div id="widget_tree"></div> var widget_tree = $("#widget_tree").NCBOTree({ apikey: "YOUR_API_KEY", ontology: "CLO" }); You can also view a detailed demonstration For more help visit NCBO Widget Wiki |