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Biological interlocked Process Ontology for metabolism
Last uploaded:
April 21, 2020
| Acronym | BIPOM |
| Visibility | Public |
| Description | BiPOm is an ontology based on systemic representation of metabolic processes. BiPOm is an ontological model carrying the main biological processes and molecular roles/functions at a high level of genericity where the usual annotated resources are treated as instances. BiPOm, 1) contains biological knowledge as instances and 2) uses automatic reasoning through Semantic Web Rule Language (SWRL) in order to automatically infer, formalize and refine properties of molecules. |
| Status | Alpha |
| Format | OWL |
| Contact | Anne Goelzer, anne.goelzer@inrae.fr |
| Categories | All Organisms |
- BiPOm inferences for Calvin cycle
- BiPOm instantiated with metabolic reactions and post-translational modifications for the Calvin cycle followed by SWRL rules based reasoning.
- BiPOm Calvin cycle instantiation
- BiPOm instantiated with metabolic reactions and post-translational modifications for the Calvin cycle.
- BiPOm E-Coli metabolism instantiation
- BiPOm instantiated with metabolic reactions and post-translational modifications for the metabolism of Escherichia coli.
- BiPOm inferences for E-Coli metabolism
- BiPOm instantiated with metabolic reactions and post-translational modifications for the metabolism of Escherichia coli followed by SWRL rules based reasoning.