Biolink Model

Last uploaded: November 11, 2024
Preferred Name

sequence variant
Synonyms

allele

Definitions

A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration.

ID

https://w3id.org/biolink/vocab/SequenceVariant

altLabel

allele

closeMatch

http://semanticscience.org/resource/SIO_010277

http://purl.obolibrary.org/obo/SO_0001060

https://github.com/ga4gh/vr-spec/Allele

https://datacommons.org/browser/Allele

http://purl.obolibrary.org/obo/GENO_0000002

definition

A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration.

exactMatch

https://www.wikidata.org/entity/Q15304597

inScheme

https://w3id.org/biolink/biolink-model

label

sequence variant

note

This class is for modeling the specific state at a locus. A single DBSNP rs ID could correspond to more than one sequence variants (e.g CIViC:1252 and CIViC:1253, two distinct BRCA2 alleles for rs28897743)

prefixIRI

biolink:SequenceVariant

prefLabel

sequence variant

subClassOf

https://w3id.org/biolink/vocab/BiologicalEntity

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