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Biological and Environmental Research Ontology
Acronym | BERO |
Visibility | Public |
Description | Biological and Environmental Research Ontology (BERO) is an application ontology developed by the combination of many ontologies (base or subsets) namely : ChEBI, ECOCORE, EDAM, ENVO, GO, MeSH, MOP, NCBITaxon, NCIT, OBI, OMO, PATO, PO and TO. |
Status | Alpha |
Format | OWL |
Contact | Chris Mungall, cjmungall@lbl.gov Nicolas Matentzoglu, nicolas.matentzoglu@gmail.com Harshad Hegde, hhegde@lbl.gov |
No views of BERO available
Preferred Name | vindesine | |
Synonyms |
3-carbamoyl-4-deacetyl-3-de(methoxycarbonyl)vincaleukoblastine 3-(aminocarbonyl)-O(4)-deacetyl-3-de(methoxycarbonyl)vincaleukoblastine desacetylvinblastine amide 3-carbamoyl-O(4)-deacetyl-3-de(methoxycarbonyl)vincaleukoblastine methyl (5S,7S,9S)-9-[(2beta,3beta,4beta,5alpha,12beta,19alpha)-3-carbamoyl-3,4-dihydroxy-16-methoxy-1-methyl-6,7-didehydroaspidospermidin-15-yl]-5-ethyl-5-hydroxy-1,4,5,6,7,8,9,10-octahydro-2H-3,7-methanoazacycloundecino[5,4-b]indole-9-carboxylate |
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ID |
http://purl.obolibrary.org/obo/CHEBI_36373 |
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alternative term |
3-carbamoyl-4-deacetyl-3-de(methoxycarbonyl)vincaleukoblastine 3-(aminocarbonyl)-O(4)-deacetyl-3-de(methoxycarbonyl)vincaleukoblastine desacetylvinblastine amide 3-carbamoyl-O(4)-deacetyl-3-de(methoxycarbonyl)vincaleukoblastine methyl (5S,7S,9S)-9-[(2beta,3beta,4beta,5alpha,12beta,19alpha)-3-carbamoyl-3,4-dihydroxy-16-methoxy-1-methyl-6,7-didehydroaspidospermidin-15-yl]-5-ethyl-5-hydroxy-1,4,5,6,7,8,9,10-octahydro-2H-3,7-methanoazacycloundecino[5,4-b]indole-9-carboxylate
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bearer of | ||
charge |
0
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database_cross_reference |
Beilstein:7162300 CAS:53643-48-4 DrugBank:DB00309
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formula |
C43H55N5O7
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has_exact_synonym |
3-carbamoyl-O(4)-deacetyl-3-de(methoxycarbonyl)vincaleukoblastine methyl (5S,7S,9S)-9-[(2beta,3beta,4beta,5alpha,12beta,19alpha)-3-carbamoyl-3,4-dihydroxy-16-methoxy-1-methyl-6,7-didehydroaspidospermidin-15-yl]-5-ethyl-5-hydroxy-1,4,5,6,7,8,9,10-octahydro-2H-3,7-methanoazacycloundecino[5,4-b]indole-9-carboxylate
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has_functional_parent | ||
has_obo_namespace |
chebi_ontology
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has_related_synonym |
3-carbamoyl-4-deacetyl-3-de(methoxycarbonyl)vincaleukoblastine 3-(aminocarbonyl)-O(4)-deacetyl-3-de(methoxycarbonyl)vincaleukoblastine desacetylvinblastine amide
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id |
CHEBI:36373
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in_subset | ||
inchi |
InChI=1S/C43H55N5O7/c1-6-39(52)21-25-22-42(38(51)55-5,33-27(13-17-47(23-25)24-39)26-11-8-9-12-30(26)45-33)29-19-28-31(20-32(29)54-4)46(3)35-41(28)15-18-48-16-10-14-40(7-2,34(41)48)36(49)43(35,53)37(44)50/h8-12,14,19-20,25,34-36,45,49,52-53H,6-7,13,15-18,21-24H2,1-5H3,(H2,44,50)/t25-,34+,35-,36-,39+,40-,41-,42+,43+/m1/s1
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inchikey |
HHJUWIANJFBDHT-KOTLKJBCSA-N
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label |
vindesine
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mass |
753.92610
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monoisotopicmass |
753.41015
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notation |
CHEBI:36373
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prefLabel |
vindesine
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RO_0000087 | ||
smiles |
[H][C@@]12N3CC[C@@]11c4cc(c(OC)cc4N(C)[C@@]1([H])[C@](O)([C@H](O)[C@]2(CC)C=CC3)C(N)=O)[C@]1(C[C@@H]2C[N@](CCc3c1[nH]c1ccccc31)C[C@](O)(CC)C2)C(=O)OC
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subClassOf |
http://purl.obolibrary.org/obo/CHEBI_140324 http://purl.obolibrary.org/obo/CHEBI_38164 http://purl.obolibrary.org/obo/CHEBI_27288 http://purl.obolibrary.org/obo/CHEBI_26878 http://purl.obolibrary.org/obo/CHEBI_25248 |
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- Problem retrieving properties:
Notes
Add NCBO Web Widgets to your site for BERO
Widget type | Widget demonstration |
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Step 2: Follow the Instructions
For more help visit NCBO Widget Wiki |
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Example 1 (start typing the class name to get its full URI)
Example 2 (get the ID for a class) Example 3 (get the preferred name for a class) Step 2: Follow the Instructions
For more help visit NCBO Widget Wiki |
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Step 2: Follow the InstructionsCopy the code below and paste it to your HTML page <iframe frameborder="0" src="/widgets/visualization?ontology=BERO&class=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMOP_0000634&apikey=YOUR_API_KEY"></iframe> For more help visit NCBO Widget Wiki |
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Step 2: Follow the InstructionsCopy the code below and paste it to your HTML page <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css"> <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script> <div id="widget_tree"></div> var widget_tree = $("#widget_tree").NCBOTree({ apikey: "YOUR_API_KEY", ontology: "BERO" }); You can also view a detailed demonstration For more help visit NCBO Widget Wiki |